Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0380 ATGATTGTGAGAAGAAGGAGGAGAATGACGAGAAGGAAGATACAGATAAAGAAAATAGACAGTGTAACAGCAAGACAAGTGACATTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAGCTCTCAACTCTTTGTGATGCTGAGATTGCCCTCTTAGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCAAGGTTCTTATATATACACGTAATTGAAAGGTATGATCAACATGCAGCCATTCAAAGACTAGGCCAATCATCTGTTGATCTGCAGGTTATTGAAGGTGATGAGAACAAGCTGCACAAGGTAGTAGCAGAAAGGACTCATGAATTGAGATTCTATGGGAAGTCTCATTACTAG 375 0.408 MIVRRRRRMTRRKIQIKKIDSVTARQVTFSKRRKGLFKKAQELSTLCDAEIALLVFSSTGKLFDYASSRFLYIHVIERYDQHAAIQRLGQSSVDLQVIEGDENKLHKVVAERTHELRFYGKSHY 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0380 124 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lele34g0380 124 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lele34g0380 124 Gene3D - 22 94 IPR036879 GO:0003677|GO:0046983
Lele34g0380 124 SUPERFAMILY SRF-like 10 88 IPR036879 GO:0003677|GO:0046983
Lele34g0380 124 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 94 - -
Lele34g0380 124 CDD MADS_MEF2_like 13 84 IPR033896 GO:0000977|GO:0045944
Lele34g0380 124 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lele34g0380 124 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lele34g0380 124 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lele34g0380 124 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lele34g0380 124 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0380 Lele-ChrLele34 3340250 3342689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0380 9 117 MADS-box Gene Family AT2G22540 54.955 2.09e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele34g0380 SRF-TF 1e-24 No_clan