Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0375 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGAGAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGCTCTCATTGTCTTTTCTTCCACTGGAAAGCTCCATGACTATGCAAGCTCAAGTATGCAGCAGATAACTGAAAGACATGATATCCATTTAGGCTTGCACAGATCAGATCAACCATGTATTGATTTGGAGATTGGAAGAGAAAGCTACAACAAGCTGAGCAATGAAATAGCAATGAAGACCCATGAACTGAGGAAGTTGAAAGGGGAAGAGTTGCAAGATTCCACAACTCAAGAATTACAAAAACTTGAGGAACTACTTGAAAGGGGTTTGACGCGGGTTTCAAAGGCAAAGGATAAAGCAATGATAAATGAGACCTACGAACTCAAAAGAAAGGGAAAGCAACTGATGGAAGAGAACAGGAGATTGAAACAGGTAACACATGAACAAGGGCAATCATTTGACTCAGTGATTTTGTCCAGCTCATCTGATAATCATCCTCAGCATTTTAAAGATTTTGATACCTCTCTCAAGTTGGGGTTTTCTTGA 615 0.4 MTRKKIEIKKIENITARQVTFSKRRRGLFKKAKELATLCDAEIALIVFSSTGKLHDYASSSMQQITERHDIHLGLHRSDQPCIDLEIGRESYNKLSNEIAMKTHELRKLKGEELQDSTTQELQKLEELLERGLTRVSKAKDKAMINETYELKRKGKQLMEENRRLKQVTHEQGQSFDSVILSSSSDNHPQHFKDFDTSLKLGFS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0375 204 Coils Coil 151 171 - -
Lele34g0375 204 FunFam Transcription factor, MADS-box 13 82 - -
Lele34g0375 204 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Lele34g0375 204 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele34g0375 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 Coils Coil 122 142 - -
Lele34g0375 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lele34g0375 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 Coils Coil 92 112 - -
Lele34g0375 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Lele34g0375 204 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Lele34g0375 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele34g0375 204 Pfam K-box region 90 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0375 Lele-ChrLele34 3226378 3232864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0375 1 203 MADS-box Gene Family AT2G22540 45.339 3.01e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele34g0375 K-box 5.2e-15 No_clan