Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0362 ATGAGACACCAGCCTATGATGAAAAGGGAAGAGCAGGAAGACAAATCTATTAGAAACTATTACTTGAAACATTCTTCATTGCTTGTTTATCTTCGCATTCTCCATTGCGTTGTTCCTTTCTTTGTTTCAGTATGGTGGGATTTTGAGAATTGCGATCCACCATCTGATGTGAATGCTTTTAGAATTACTCACTTCATAATGGAGGCAGTTAGAGCCAAAGGGATCATGGGGCCTCTTCAAATTAGGGCATTTGGTGACGTTTATCATCTCACAAGGGCCAACCAGGATGCTCTCACATCCACTGGGATCAAAATCATCCACGTTCCTAGAGTAATGAACAAAAGCATGCTTTTGGCTGTCCTTGTCTGCATCTCTCCTGTTATGCTTACAGTTCTCATGGCAATGTCCCTGTTGTGTTGTCCATTACTTTTTCACATTTCAAAATTATTGTCTCTAACTACAATTGCAGGTGGAAAGAATACGGCCGATAGATCTCTTCTTATTGATCTTATGTATTGGGTTTCCCAAAATCCTGCTCCGGCGCATTTGTTTCTAATTTCAGGTGATAGGGATTTTGCTGAACTATTACATCGTTTGAGAATGAATAACTACAATATCCTAATTGCTGGTATAGAGATTCCTAATCTTCTCTGCAGTGTAGCAACTATAGTGTGGCACTGGAATTCATTACTTAGAGGAGAAAATCTTGAAGGAAAACATTTCAATCATCCTCCTGATGGTTTGTATGGTACTTGGTATGGTCGCCATGAGGCACCTCTTGAAGACCCTTTCGCTGATGGAAAGCAATCTACACGTTCACATATTGGGGAATCCCCAAAACCTATCTCAGGTTTGAACTTACGACCAATTCCAAAGGCAGTTGTGAGGCAGATTCGTCAAATATTGAATTCACATCCAAAAGGCATCTCTTTATCATGTCTTCGAACTGAGTTGGAATATGCTGGTATTACCTTGGATAAAGATTACTATGGGTATAACAAGTTTTCCCATTTTCTTTTATCCGTGGTACGTGTACAGCTTCGGGGTGCACGTGATAAAGAACCTATTGCACATTACATCCCCAAAAAATCTCCTGTTCCCATTGAAAGCAGTTTTGCACCATCAATGGAATTAGTTGATAATGACGGGTTGAATCATGTGGCTACTTCAATGGCCTCATCTCATGAACTTAGTGGAGAAGATATTCCAGAGGTCCAACAGATTGCAGACGTGGCTGAGACCAAGAGTCAATTGCCTCCTAAGGAGAATGAAATTCTTTGCTCTAGTGATACAATTCAAGCTTTTGCAGAAAGTGCAGCTTGTCACATTGGTGGAAGCACTGAATCTGTGATTGCCAAAAGCAGTGGTGGAAGCGGGGGAACTCACAGCAGTACGGCTAGCAAACGTCTAACTTTTGATTGTTGGATTAAAAGTTGGTGGCCATTCAGGAAAAAAGTTGGAAACACGCATAATTCGACTGCTCATGGGAATGAGATGGTTTGTAATGCTGAAGAGCCTGAGTTATCAAATCTGAAACAGAGGGTCAGTTATTCTGAAGAGCTGCAGACATTAGAACAGAGACAAATAGCTAGTCAATTTAAGGAGCCCGAGTTATCAGAACCAAGACAGACAATGAATCATTCTGGAGAGCCTAAGTTATTTTCTTGTAGTTCCTTCTGGGAGGAAATGGAATCTTTTGTTTTCACCTCCAAAGGAGAAATTCTTGTCTTCCACTCAAGAAGCAGGAAGGATATGGCGCTCAGTTTTCAAAAGTATGGACCTCAGGTTCTCCACTCTCTTAGTGAAAATGATCTCCTTCTATTGGTAGATTTGTTAATATCTGAGAAAAAATGTCTGGAGGAAAGGCCTTCTCAGACTAATCCTTTCCGTGTCATTCCAAGCATAACAACAAGAAATAACTCGCAAAAATCATCGGAATGTGAAGTTGATAAAAAACAGAGTATTCCTCATAGCATGGCTTCTTCACCTGCCAGTCAAAAAAAGCATACTGAGAAATCTGCAACTGAAATGTTAGCAGATGTTCAGAAACTTGTGAGTGAGATGTTGACGGAACGCCCGGATGGGTGCAATATGGGTCAGATACCAATTCTCTTTCTTCAGAAGTATGGCTACTTTTTAGATGTTGGGAAGCTTGGTTATGATAGGTTATCGTCCCTCGTACAGAGTCTTCCTGGAGTGAAAACAGCTCGTTCTAATTTCTTTCCCGCAAATTGTGGCGTACGTGTTTCTGGTAATGAAACTTCAATTCTCAAAACTCAAGGTACAAAATTAAGTGATGTACAGTACCAATATTCAGATAATGAGTTGCATGATTCATACTCTGAAGATGATTGGAAAGACTCCCCGTGGGAGGAATTAGGACCTGTTTCTGTCAGCAATTCCAACGAGAGCGACCTGGAATCAGGGCCAAAGCAGGAAGCAATAGTGCTAAAGACCGCAGTAGATCCTGATTATGAACCCGATCTCTCTGGTGATGATTCTTCCAAATCTGGAGGAGATAACTCCTGTTTAACTCAAGCAGAAGAGGAAGGTCAGCCAAAACTTAAGGAGAGTGACCTGGAATCAGAGCCAAGGCAGGAAGAAATAGAGCTAAAGACCGCTATAGATCCTGATTATGAACCTGATCTCTCTGATGATGATTCTTCCGAATCTGGAGGAGTTAACCTATGTTCAACTCAAACAGAAGAGGAAGAGGAAGGTCAGCCAAAACTTAACGAGAGCAATGCCAACGAGAGTGACCTGGAATCAAAACCAAGGCAGGTAGCTGTAGAGCTAAAGACCGCAATAGATCCTGATTATGAACCTGATCTCTTTGATGATGATTCTTCTGAATCTGGAGGAGTTAACCTATGTTTAACTCAAACAGAAGAGGAAGAGGAAGGTCAGCCAAAACTTAACGAGAGTGATGGCAATGAGAGCGACCTGGAATCAAAACCATGGCAGGAAGCTGTAGAGCTAAAGACTGCAATAGATCCTGATTATGAACATGATCTCTCTGATGATGATTGTTCTGAATCTGGAGGAGATAACTCCTTGTATGGCAGTCAAGGAGAGGATAGTGGGAATCCGAATGAGGTCAATACAGAAGATGATGGTCTAGCTGATGGTTTAAATCCACCAAGGATTTCCACTCCGGCTACCAGTTCAGAAATTCTTTCAGGGGACTATGAAGAGCAGCACAAGCCTCTGAAAATCTGTTCACTTGATGCTGAACCAGTCTCACACAAGAACAAGGAGATGATCAAAGGGATATTACAATGCTTGAAAAGGTCAGAGGACATGGATATGTCAAATTGA 3318 0.415 MRHQPMMKREEQEDKSIRNYYLKHSSLLVYLRILHCVVPFFVSVWWDFENCDPPSDVNAFRITHFIMEAVRAKGIMGPLQIRAFGDVYHLTRANQDALTSTGIKIIHVPRVMNKSMLLAVLVCISPVMLTVLMAMSLLCCPLLFHISKLLSLTTIAGGKNTADRSLLIDLMYWVSQNPAPAHLFLISGDRDFAELLHRLRMNNYNILIAGIEIPNLLCSVATIVWHWNSLLRGENLEGKHFNHPPDGLYGTWYGRHEAPLEDPFADGKQSTRSHIGESPKPISGLNLRPIPKAVVRQIRQILNSHPKGISLSCLRTELEYAGITLDKDYYGYNKFSHFLLSVVRVQLRGARDKEPIAHYIPKKSPVPIESSFAPSMELVDNDGLNHVATSMASSHELSGEDIPEVQQIADVAETKSQLPPKENEILCSSDTIQAFAESAACHIGGSTESVIAKSSGGSGGTHSSTASKRLTFDCWIKSWWPFRKKVGNTHNSTAHGNEMVCNAEEPELSNLKQRVSYSEELQTLEQRQIASQFKEPELSEPRQTMNHSGEPKLFSCSSFWEEMESFVFTSKGEILVFHSRSRKDMALSFQKYGPQVLHSLSENDLLLLVDLLISEKKCLEERPSQTNPFRVIPSITTRNNSQKSSECEVDKKQSIPHSMASSPASQKKHTEKSATEMLADVQKLVSEMLTERPDGCNMGQIPILFLQKYGYFLDVGKLGYDRLSSLVQSLPGVKTARSNFFPANCGVRVSGNETSILKTQGTKLSDVQYQYSDNELHDSYSEDDWKDSPWEELGPVSVSNSNESDLESGPKQEAIVLKTAVDPDYEPDLSGDDSSKSGGDNSCLTQAEEEGQPKLKESDLESEPRQEEIELKTAIDPDYEPDLSDDDSSESGGVNLCSTQTEEEEEGQPKLNESNANESDLESKPRQVAVELKTAIDPDYEPDLFDDDSSESGGVNLCLTQTEEEEEGQPKLNESDGNESDLESKPWQEAVELKTAIDPDYEHDLSDDDCSESGGDNSLYGSQGEDSGNPNEVNTEDDGLADGLNPPRISTPATSSEILSGDYEEQHKPLKICSLDAEPVSHKNKEMIKGILQCLKRSEDMDMSN 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0362 1105 CDD LOTUS 291 351 - -
Lele34g0362 1105 CDD PIN_limkain_b1_N_like 42 209 - -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 850 879 - -
Lele34g0362 1105 Pfam OST-HTH/LOTUS domain 678 734 IPR025605 -
Lele34g0362 1105 Pfam OST-HTH/LOTUS domain 292 349 IPR025605 -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 888 902 - -
Lele34g0362 1105 Gene3D - 291 359 IPR041966 -
Lele34g0362 1105 Gene3D - 677 740 IPR041966 -
Lele34g0362 1105 CDD LOTUS 678 739 - -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 1012 1034 - -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 822 1066 - -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 778 810 - -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 964 988 - -
Lele34g0362 1105 Gene3D - 42 228 - -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 903 927 - -
Lele34g0362 1105 ProSiteProfiles OST-type HTH domain profile. 290 363 IPR025605 -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 794 808 - -
Lele34g0362 1105 Pfam NYN domain 42 221 IPR021139 GO:0004540
Lele34g0362 1105 MobiDBLite consensus disorder prediction 640 672 - -
Lele34g0362 1105 ProSiteProfiles OST-type HTH domain profile. 677 751 IPR025605 -
Lele34g0362 1105 MobiDBLite consensus disorder prediction 834 848 - -
Lele34g0362 1105 PANTHER LIMKAIN B LKAP 42 685 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0362 Lele-ChrLele34 3131493 3135868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0362 42 233 C2H2 Transcription Factor Family AT5G61190 32.821 3.32e-26 114