Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0356 ATGGGGCTCCGTCACCGGAAGGTTCTCGAAGAAATCTGCTACCTTTACTGCAACATGAAAGATTCTCCCCCTTGTTTATCCTCTGATTGCAAAGGTTGCCGTGTCCAGTGCTCCGTCGAGCCGCCGATTGACTACACCCCGCCATCTCCTTTGGCCTTCGATGACTATGGCTATTTCGGTGATCCCCACAAAAGCCACCACAAGATCTCCACCTGGTTGACCGTCGTTATCGCTGTTCTCGCCGCCGCTTTCCTCGCCCTCCTCTGCTTCGCCATCTACCGGAGATTCCTCTCCGGCCGGTTCAGGAGAAGGAGCTCGGAGACGGAGGAAGATCCACGGGGAGATTTTCTCGATGAGGAAGAGGGTCCTGTGTTGGACCATCCCATATGGTATATTCGAACCCCTGGTCTTCAACAATCGATTATTTCTGCGATTACTGTGTGTAAATATAAGAAAGGGGAAGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGTGAGTTTGAAGAGGATGAGAATCTCAGGCTTTTGCCCAAGTGTAATCACGCTTTTCATCTCCCTTGTATTGATACCTGGCTTCGATCTCACACCAACTGCCCTCTGTGCCGAGCTCCGATCGTCACCAACCCCGCCACGGTTATCGCCTCGCCGGAGCCGGGGCCAAATGTTGTTGCTTCGACTGATTCAGAAGAACCCCAGATGCAAATAGTTGAAAATGGAAGTGAAAATAGTGGTGGAGTTGTGGGGGAGAACAGTGATGGTGAATTGAGAACTAGAGATGAGGAAGACGAATCAGGAGAAGGAGAAGGAGGAAGAAGAAGAGAAATGGTAGATGAAGAAGAATTAGGGAATTTGCAACCGAGAAGAAGATCCGTGTCTCTGGATTCTTCAGCTGTAGAGAAGATCAATCGTGCTCTTGCTAGAACTAATAATTCTCCATCTTCATCATCTTCTTCTTACTCAAAGAAGGTTTCCAAAAGCGGTTCTTCTTCTTTCAGAATAAAGTCTCTTCAGATTGTTGCAGGCACTTCAATGAAGAGATCTCGTTCACATTCATGGTACAGTCAAAGTCAGAGGAAGCCAAATGTTCCTATTAGAAGCTTCTGA 1110 0.4775 MGLRHRKVLEEICYLYCNMKDSPPCLSSDCKGCRVQCSVEPPIDYTPPSPLAFDDYGYFGDPHKSHHKISTWLTVVIAVLAAAFLALLCFAIYRRFLSGRFRRRSSETEEDPRGDFLDEEEGPVLDHPIWYIRTPGLQQSIISAITVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPIVTNPATVIASPEPGPNVVASTDSEEPQMQIVENGSENSGGVVGENSDGELRTRDEEDESGEGEGGRRREMVDEEELGNLQPRRRSVSLDSSAVEKINRALARTNNSPSSSSSSYSKKVSKSGSSSFRIKSLQIVAGTSMKRSRSHSWYSQSQRKPNVPIRSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0356 369 CDD RING-H2_PA-TM-RING 161 204 - -
Lele34g0356 369 SMART ring_2 162 203 IPR001841 -
Lele34g0356 369 FunFam RING-H2 finger protein ATL54 137 210 - -
Lele34g0356 369 MobiDBLite consensus disorder prediction 254 287 - -
Lele34g0356 369 Pfam Ring finger domain 161 204 IPR001841 -
Lele34g0356 369 MobiDBLite consensus disorder prediction 290 369 - -
Lele34g0356 369 SUPERFAMILY RING/U-box 156 210 - -
Lele34g0356 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 65 228 IPR044675 -
Lele34g0356 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Lele34g0356 369 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lele34g0356 369 MobiDBLite consensus disorder prediction 238 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0356 Lele-ChrLele34 3040559 3041668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0356 70 211 C3H Transcription Factor Family AT1G72220 53.205 7.03e-47 163