Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0298 ATGAAGGGCCGCCGCCGCCGCTTCCATTTTGTTATCTCGTCTCTCACTCACTGCGTTTCTTTTCCTCTACGACGAACCAACCCGGGACATAATCGGAGAACAATTCTCTCGTCTCTGTTTAAAATGGCTGAAGTGGAAGAGTATCGCTGCTTCGTCGGTGGCCTTTCATGGTCAACATCTGATAGAAAGCTAAAAGATTCATTTGAGAAGTTTGGAAATCTTCTTGAAGCCCGGGTGGCTGTGGACAAGTTCTCAGGTCGCTCTCGTGGTTTTGGATTTGTAACGTTTGATGATCATAAAGCTATGGAAGATGCCATTAAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATTACTGTTGATAAAGCAAAACCTCAACAAGGATCAGCTAGAGATGATGGTGATCGGTACCAAGAAAATGGTCGTGACCGCAATCATAGACGAGATTATGGAGGTGGTCGAAGTTCTAATAGTGGTGAGTGCTTTAAGTGTGGCAAACCTGGTCATTTTGCTAGAGAGTGTCCTGAAGAAGAGGGAAGAGGTGGAAGGTATGGTGATAGAGAAAGTAGATATGGTAGCAGCGGTGGTGGAGGTCGCTATGGCCCTGACAGAAATGCTGATCGTTATTCTGGTGGGCGAAACAGGGATGCTGATAGACATGGGGATTATGGAAATGATCGATATAACCGTAGTGATCGTGCTGGACCTTATGAGAGGCGAGGAACAGGAGGCTCTCGTTCTGGATAA 750 0.4613 MKGRRRRFHFVISSLTHCVSFPLRRTNPGHNRRTILSSLFKMAEVEEYRCFVGGLSWSTSDRKLKDSFEKFGNLLEARVAVDKFSGRSRGFGFVTFDDHKAMEDAIKAMNGMDLDGRTITVDKAKPQQGSARDDGDRYQENGRDRNHRRDYGGGRSSNSGECFKCGKPGHFARECPEEEGRGGRYGDRESRYGSSGGGGRYGPDRNADRYSGGRNRDADRHGDYGNDRYNRSDRAGPYERRGTGGSRSG 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0298 249 Gene3D - 36 157 IPR012677 -
Lele34g0298 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Lele34g0298 249 MobiDBLite consensus disorder prediction 121 249 - -
Lele34g0298 249 Gene3D - 158 216 - -
Lele34g0298 249 SUPERFAMILY RNA-binding domain, RBD 42 155 IPR035979 GO:0003676
Lele34g0298 249 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Lele34g0298 249 MobiDBLite consensus disorder prediction 207 240 - -
Lele34g0298 249 Pfam Zinc knuckle 161 177 IPR001878 GO:0003676|GO:0008270
Lele34g0298 249 SUPERFAMILY Retrovirus zinc finger-like domains 143 182 IPR036875 GO:0003676|GO:0008270
Lele34g0298 249 SMART rrm1_1 49 122 IPR000504 GO:0003723
Lele34g0298 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Lele34g0298 249 MobiDBLite consensus disorder prediction 167 188 - -
Lele34g0298 249 MobiDBLite consensus disorder prediction 127 154 - -
Lele34g0298 249 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 42 244 - -
Lele34g0298 249 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0298 Lele-ChrLele34 2460084 2462323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0298 50 144 Eukaryotic Initiation Factors Gene Family AT4G34110 30.526 4.42e-07 48.5