Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0287 ATGTCATTCCGAAGCATAGTTCGTGATGTAAGGGACAGTTTTGGGAGCTTATCTAGGAGGAGTTTTGATGTCAACAGGCTGACTGGCCACCACAGAGGAAAGTCTCACGGATCTTTTCAAGATTTACATGATCAGCCTCTAGTGATTCAAAGTAGCCGCTGGGTGAGCCTACCCCCAGAATTGCTATATGATGTTATTAGAAGGCTAGAGGAGAGTGAGAGCACATGGCCCGCTCGAAAGCATGTTGTTGCGTGTGCTGCAGTTTGCCGGTCCTGGAGGAACATGTGCAAGGAAATTGTGAAGAGCCCAGAATTCTGTGGAAAACTCACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTTCTCCTATCTGCCAAGAGGACGAGAAGAACAACTTACACAGAGTATGTTGTTTCCATGGATGCTGACAACATCTCCAGATCAAGTAGCACTTACATTGGAAAGCTGAGATCAAATTTTCTTGGCACAAAATTCATAATATATGATACGCAGCCACCATATACTTCTGCGCAAATACCCCCTCCAGGTACCGGGAAGATAAGCCGAAGGTTTTATTCCAAAAAGGTCTCACCAAAGGTCCCATCTGGTACCTACAACATAGCTCAGGTGACATATGAATTAAATGTGCTAGGGACACGAGGCCCAAGGAGGATGCACTGTATTATGCATTCTATTCCAGTCTCTGCGCTTGATACGGATGGTACGGTTCCTGGCCAACCAGAGCTGCTTCCTTGCACCCTTGAGGATTCATTCCGTAGCATTTCCTTCTCCAAGTCTCTAGACCACTCTATCGAGTTCAGTAGTGCACGATTCTCTGACAATGGGGGAGCATCCTGCAGCAACGATGACGAGGATAGCAAGATGAGACCCTTGATTCTGAAAAACAAACCTCCAAGATGGCACGAACAGCTTCAATGCTGGTGTCTCAACTTCCGTGGACGTGTGACAGTTGCTTCTGTCAAAAATTTCCAGTTGATAGCGGCCACCCAGCCAGCTGCTGGCGCGCCCACACCGTTTCAGCCAGCCCCACCAGATCACGATAAGATAATCCTGCAGTTCGGCAAAGTTGGGAAAGATTTGTTCACCATGGACTACCGATACCCTCTATCCACTTTCCAGGCTTTCGCGATATGCTTGAGCAGCTTCGACACCAAACTGGCTTGTGAATAG 1293 0.4671 MSFRSIVRDVRDSFGSLSRRSFDVNRLTGHHRGKSHGSFQDLHDQPLVIQSSRWVSLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVVSMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGKISRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDTDGTVPGQPELLPCTLEDSFRSISFSKSLDHSIEFSSARFSDNGGASCSNDDEDSKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPFQPAPPDHDKIILQFGKVGKDLFTMDYRYPLSTFQAFAICLSSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0287 430 FunFam Tubby-like F-box protein 49 102 - -
Lele34g0287 430 FunFam Tubby-like F-box protein 111 430 - -
Lele34g0287 430 Gene3D Tubby Protein; Chain A 113 424 IPR025659 -
Lele34g0287 430 Gene3D - 49 102 - -
Lele34g0287 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Lele34g0287 430 SUPERFAMILY Tubby C-terminal domain-like 103 430 IPR025659 -
Lele34g0287 430 Pfam F-box domain 54 101 IPR001810 GO:0005515
Lele34g0287 430 Pfam Tub family 115 425 IPR000007 -
Lele34g0287 430 ProSitePatterns Tub family signature 1. 352 365 IPR018066 -
Lele34g0287 430 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Lele34g0287 430 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele34g0287 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Lele34g0287 430 PRINTS Tubby superfamily signature 334 351 IPR000007 -
Lele34g0287 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Lele34g0287 430 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele34g0287 430 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lele34g0287 430 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Lele34g0287 430 PANTHER TUBBY-RELATED 29 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0287 Lele-ChrLele34 2371571 2374160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0287 1 430 TUB Transcription Factor Family AT1G76900 68.602 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele34g0287 Tub 4.8e-115 CL0395