Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0268 ATGGATATAAGAGGTCGTCCTCGCGTTGTCGTCAATGGCGTTGGAAGAACCAGAACCTTCCATTACTTCTGGTGCCAAACTTGCCAGCTCGCCGTCAGAATCCCCTCCTCTGCAAACCCTAATTTCTCTTTCTGCCCCTTTTGCTCCCATCAATTACACATCGAACTCGATATCACGAGGCCCAGGCTTCTCATGAATAATCCTCCGAATAATTCACAGCCTTCACCTGCTGCTCAATTGATGAACGGATTGGCTCTCATTCTGGATCCATCTACGAGAGAGCGAAACGCTCGATTGCATCGGACAGTGCAATGGATTGAAGAAACCGAAGAAGGACCGAATCCTCAGACCTGGATCACTCTCCGATTTGTGAGACCAACTCGTCCACAAAGACACCTTCCGGGAACCACCGACGACAACAGGCCACCTCCGGCGGCAGATTCCGCCATCGAAGGGTTACCGACGGTGAAGCTAACGGAAACACGATTGGCGAGCGATCCGAATTGCGCGATTTGCAAAGAGGAGTTTCAGATTGATATGGAAGTAAAAGAGTTACCGTGCAAGCATTTATATCATCCCGATTGTATTACTCCTTGGCTTCGCATTCACAATACATGTCCGATCTGCCGCCATGAACTGGGAAGTGCTTCATCGTCGTCTTCTTCCTCTTATTCTAATTACCGCGAAGGAGATTTCTCATATTTTGACTATCGATTTGGATTTGGGTCTCAAGAAGCTACACACGGCTTGAATTGGCTTTGGAGCCAGCTTGTTTCTTTGCGACCTGTGCGTGCAGTTATGGAATGGACTCAGAGATATTTGTTTGATTTCTCGGAAAATCGTCATGAACGAGGAGGTAAGCTTCGGGGATCATACCTTTTGAAGCCCTAA 891 0.4792 MDIRGRPRVVVNGVGRTRTFHYFWCQTCQLAVRIPSSANPNFSFCPFCSHQLHIELDITRPRLLMNNPPNNSQPSPAAQLMNGLALILDPSTRERNARLHRTVQWIEETEEGPNPQTWITLRFVRPTRPQRHLPGTTDDNRPPPAADSAIEGLPTVKLTETRLASDPNCAICKEEFQIDMEVKELPCKHLYHPDCITPWLRIHNTCPICRHELGSASSSSSSSYSNYREGDFSYFDYRFGFGSQEATHGLNWLWSQLVSLRPVRAVMEWTQRYLFDFSENRHERGGKLRGSYLLKP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0268 296 CDD RING-H2_RNF126_like 169 210 - -
Lele34g0268 296 SUPERFAMILY RING/U-box 149 215 - -
Lele34g0268 296 FunFam E3 ubiquitin-protein ligase RING1-like 134 216 - -
Lele34g0268 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 215 IPR013083 -
Lele34g0268 296 Pfam Ring finger domain 168 210 IPR001841 -
Lele34g0268 296 MobiDBLite consensus disorder prediction 130 149 - -
Lele34g0268 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 213 - -
Lele34g0268 296 SMART ring_2 169 209 IPR001841 -
Lele34g0268 296 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0268 Lele-ChrLele34 2204015 2204905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0268 6 274 C3H Transcription Factor Family AT1G68180 35.088 2.35e-40 139