Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0236 ATGGAAAGGAACACGGCGCCAAATGGAGGGCTAGGCGCAGATGAAGCGCGTGGACGTCACACTTCAATTATAGAGTTGACGGCCAAGTCAAATTGGCGCGGGAGCAAGCGAAATGTCCCCTTCATAAGTGGGGCCCACACTCGACTAGCCCTGCCTTATCCTGAAGGAGGAGATTTGATTACTGTCTATTCGCAGCAGGAGTTTGAAGAAAGGAGGGGAGAGAGAGAGATGGAGACACAGTTCAGTCACTCTCTCTTCGACAGGCACCACATCTTCAAGTCTAACACTCCCGCCGTTAAATGGGTTAAAGAATGGGTTCCTCAGGATGTTGTGGCCACTGGTGGGAAGTGCATGCTTTACAGATGGTTAAGAGAGGAATCCTTAAAGGCCTTGAAGGATAGTGAAAAAGAACCATCAGTGCCTGAACCAGAACCTGAGCCAACTAGTGAAGTACTTTTTCTCTGTAGCTTTGAAGGCTGTGGGAAAACTTTTATAGATGCTGGTGCTTTGAGAAAGCATTCTCACATCCATGGAGAAAGGCTATTTGTTTGTCACTATGACGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACCGGGGAACGGCCTTATGTGTGTCCTGTTGAAGGCTGTGGGAAGGCCTTCTCCCTCGATTTCAACCTAAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAAAATCACATTGCAGCACACCATGAAAAGAATGGATCTGTGGATCAGAATGTGACAAAGTATAATACTCCGCCTTCAGAGAAGCCGACTAAAGCTACGAAACCTTCTGGGGGTGCTTATGCTTCTGCATCATCTGATCGTCCTTTTGTTTGTCCTTATGAAGGGTGTGAAAAGGCCTACATTCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGTGATGAAAATGTTGCAGAGAATAATAATGCTCAGGCTAATAATAACAATGCTGACAATGAATTGGATGAAGCAAGCGATCAAGATGCCTATAATGGTGGTGGGAAACGATCAAATGGTAGAATTCAGAAGCAAAATAAGCCCAAACCAAACTTGAAGATGCCTCCATTGAAAATCGCGCGGCGCAAAGCATCATCGTCAACACCCTCTTCTGTGACCCATATGAAGGTGATTAAGAAACCTTGGCCAGTGAAAGAAGAAACCTTCGAGGAAGAAGACAGTGAAGAAACGGAGGAGGATCGGGACAACGTTGAAGATGGTTGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1386 0.4452 MERNTAPNGGLGADEARGRHTSIIELTAKSNWRGSKRNVPFISGAHTRLALPYPEGGDLITVYSQQEFEERRGEREMETQFSHSLFDRHHIFKSNTPAVKWVKEWVPQDVVATGGKCMLYRWLREESLKALKDSEKEPSVPEPEPEPTSEVLFLCSFEGCGKTFIDAGALRKHSHIHGERLFVCHYDGCGKKFLDSSKLKRHFLIHTGERPYVCPVEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKNGSVDQNVTKYNTPPSEKPTKATKPSGGAYASASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENNNAQANNNNADNELDEASDQDAYNGGGKRSNGRIQKQNKPKPNLKMPPLKIARRKASSSTPSSVTHMKVIKKPWPVKEETFEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0236 461 MobiDBLite consensus disorder prediction 341 357 - -
Lele34g0236 461 SUPERFAMILY beta-beta-alpha zinc fingers 303 331 IPR036236 -
Lele34g0236 461 MobiDBLite consensus disorder prediction 334 461 - -
Lele34g0236 461 ProSitePatterns Zinc finger C2H2 type domain signature. 244 267 IPR013087 -
Lele34g0236 461 SUPERFAMILY beta-beta-alpha zinc fingers 193 245 IPR036236 -
Lele34g0236 461 SUPERFAMILY beta-beta-alpha zinc fingers 155 206 IPR036236 -
Lele34g0236 461 Gene3D Classic Zinc Finger 178 210 - -
Lele34g0236 461 SMART c2h2final6 153 177 IPR013087 -
Lele34g0236 461 SMART c2h2final6 308 333 IPR013087 -
Lele34g0236 461 SMART c2h2final6 182 206 IPR013087 -
Lele34g0236 461 SMART c2h2final6 242 266 IPR013087 -
Lele34g0236 461 SMART c2h2final6 212 236 IPR013087 -
Lele34g0236 461 Gene3D Classic Zinc Finger 211 240 - -
Lele34g0236 461 Gene3D Classic Zinc Finger 241 271 - -
Lele34g0236 461 ProSitePatterns Zinc finger C2H2 type domain signature. 184 206 IPR013087 -
Lele34g0236 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 241 IPR013087 -
Lele34g0236 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 211 IPR013087 -
Lele34g0236 461 FunFam Zinc finger protein 410 210 237 - -
Lele34g0236 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 308 338 IPR013087 -
Lele34g0236 461 Coils Coil 344 364 - -
Lele34g0236 461 FunFam zinc finger transcription factor YY1 239 270 - -
Lele34g0236 461 MobiDBLite consensus disorder prediction 266 305 - -
Lele34g0236 461 ProSitePatterns Zinc finger C2H2 type domain signature. 310 333 IPR013087 -
Lele34g0236 461 ProSitePatterns Zinc finger C2H2 type domain signature. 155 177 IPR013087 -
Lele34g0236 461 Gene3D Classic Zinc Finger 278 353 - -
Lele34g0236 461 FunFam zinc finger transcription factor YY1 153 178 - -
Lele34g0236 461 FunFam Zinc finger transcription factor YY1 283 352 - -
Lele34g0236 461 FunFam Putative zinc finger protein 143 179 209 - -
Lele34g0236 461 Pfam Zinc finger, C2H2 type 212 236 IPR013087 -
Lele34g0236 461 MobiDBLite consensus disorder prediction 424 438 - -
Lele34g0236 461 MobiDBLite consensus disorder prediction 274 289 - -
Lele34g0236 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 271 IPR013087 -
Lele34g0236 461 Gene3D Classic Zinc Finger 153 177 - -
Lele34g0236 461 ProSitePatterns Zinc finger C2H2 type domain signature. 214 238 IPR013087 -
Lele34g0236 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 177 IPR013087 -
Lele34g0236 461 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 86 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0236 Lele-ChrLele34 1951585 1956530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0236 86 447 C2H2 Transcription Factor Family AT4G06634 60.215 1.29e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele34g0236 zf-C2H2 0.00018 CL0361