Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0175 ATGATCAGATTGTTCCGTCCCACTAACTGTACCACACGATCATGTATCTCTCTGTCAGCACATTCTATTTCTTCTCAATTAACCCACCTCCACCATTACCAATCCACGGCTTCTATAGAATTCGATTCCCATTTCTACGCAGCTACGCTTCAAAAATGCATACAAAACGGTGACTACGACTCCGGAAAAGGCCTTCACTGTCACATCATTAAGACAGGCGCTTCTTTGGACTTATTTGCATTCAACGTTCTTCTTAATTTGTATGTAAAGTCTGATTCTTTGTCCGATGCATCTCAACTGTTCGACGAAATGCCCAGCAGTAATACTGTCTCCTTCACTACATTGGCTCAGGGTTACATGCGGTCACTTCAATTCCCTGCCGCTCTTGACTTATTCCTTAGGTTATTCAGAGGAGGCCACCAGCTTAATCCTTTTGTTTTCACATCCATTCTCAAGTTGCTTGTCAGTATGGACAGCGCACAGATGTGTTTCGCCATTCATTCATGTATTTATAAGCTTGGTTATCACTCTGACGCATTTGTTGGTACTGCTCTTATTGATGCCTACTCTGTTTGTGAATGTGTTGAGATTGCTAGAAATGTTTTTGATGACATTCTTTATAAGGACATGGTCACTTGGACTGGCATGGTAGCTTGTTATGCTGAGAATGACTGCTTTTACCGTTCATTACAACTTTTCTCCTACATGAGGCTAATAGGATACAAACTAAACAACTTTCTCTTCACTGCAGTGCTCAAGTCCTGTCTTGGCCTACAGGCCTTTCGGCTTGGCATGAGTATTCATGCATGTGCTTTGAAAACTCATCATGAACAGGATCTTTATGTTGGGCTTGCATTGCTGGAATTATATAGTAAGTCCCAAGACCTTGATGCTGCACGGCAATTTTTCGAGGAAATGCCTAAAAATGATCTTATTCCTTGGAGTCTAATGATTGCTCGGTATGCTCAGAGTGACAAAAGTAGTGAGGCTTTGGAATTGTTCCAGCGTTTGTGGCAAACATCCATTGTCCCTAATCAGTATACATTCGCTAGTGTGTTGCAAGCTTGTGCCAATTTACCTGCATTAAATTTGGGAGGGCAAATTCATTCTTATGTCCTGAAAGTTGGTCTTGACTCAAATGTGTTTGTCTCTAATGCCCTCATGGATGTTTATGCCAAGTGTAGGGAAATGGAGAACTCAATGAAATTATTTGTGGAATCACCTGAGCATAATGACGTGACTTGGAATACCATGATTGTTGGTTATGTGCAGTTAGGAGACGAGGAGAAGGCACTAAATATGTTTGTATCCATGCTTGCTTATCCCATACAACCAACTGAAGTGACATACTCAAGTGTTCTTCGTGCCTGTGCAAGTTTAACATCATTGAAGCAAGGACATCAGGTTCATTCTTTAACTGTCAAAACCATATATGATAAAGACACTGTAGTTGCCAATTCATTGGTAGATATGTATGCCAAATGTGGTAGCATTCGTGATGCCCGAATAGTATTTGATAAGATGGGGAAACGAGATGAAGTTTCATGGAATGCTATGATATGTGGATATTCCATGCATGGCCTAGGTGTGGAGGCCCTAAATATGTTTGAAATGATGCAACAGTCTAATTGTAAACCAAATAAACTAACTTTTGTTGGTGTCCTATCCGGATGTAGCAATGCAGGACTGCTAGATAAGGGACAAGAGCTCTTTAAGTCAATGATGCAAGACTATGGCATCGAACCATGTATAGAACATTATACTTGTATGGTTTGGCTGCTTGGAAGGTCAGGCCATCTTGAGAAAGCAGTGAAACTCATCGGTGAGATTCCATTTCAGCCTAGTGTTATGGTGTGGCGAGCATTGCTTGGTGCTTGCGTCATCCATAATGATATTGATCTTGGAACAGTTTGTGCCCAACGTGTACTTGAGATGGATCCACACGACGATGCAACCCATGTACTTCTTTCTAACATGTATGCCACGGCAAGGAGATGGGACGGTGTTGCTTCTATTAGAAAAATTATGCACATAAAAAGAGTCAGGAAGGAGCCAGGGTTAAGTTGGATTGAGGATCAAGGTGTGGTTCACTATTTTACTGCAGGAAACACCAATCATCCTGACATTAAACTTATCAGTGCAATGCTTGAATGGTTAAACATGAAGACTAGGGAGGAAGGATATGTACCCAATATCAATGCTATTTTGCTCGATATGGAGGATGCTGAAAAAACACGTCTCTTGTGGGTTCACAGTGAAAGATTAGCTCTGGCATTTGGACTGATTCGATTGCCACGTGGTTGTCCTATACATATCATAAAAAATCTCCGTATATGTGTAGATTGCCACATCGTTATGAAGTTGATATCCAAAATTGTGCAGCGAGATATTATTATCAGAGATATGAATCGGTTTCACCATTTTCAGCATGGTATTTGCTCCTGTGGTGAAGTTGTATATGCAAATGATCATGTCATATCTTCCTCTTCTGTTGCGAAAGAGAGAAAGGTTCATGAATGGCTGTGTCTTCCCCTTCTTCTCAACTTCTTGTTGCTTTCATTTGCAGAATCAGCTTCCATGGATGATGATGTGAGTGCCCTAAATTCTCTGAAGAACCTAATGCGAAAGGTACCCCAAAGTTGGGAGAGTTCGGATCCTTGCAATGGCTGGGAGGGAATTACCTGCACCCAATCTCGTGTTACATCCATAAAATTAGCAGGCATGGATTTAAATGGCCAGCTTTCTGCAGACATTGGATCGTTCTCCGAATTACAGGCTTTGGATCTCTCTTTCAATAAGTACCTAGGAGCACTACTTCCAAAAGAAATTGGAAGTTTGAAGAAGCTGGAGGAATTATTTCTTGTTGGTTGTGGTTTCACTGGTCCTATTCCAGATGAAATTGGATCATTACTAGAGCTTGCCTATCTATCTCTAAACTCTAACAGCTTTAGTGGAAGAATTCCAGCTTCCGTTGGAAATCTATCAAAACTGCAATGGCTAGACTTAACTGATAATCAACTTGTTGGACCTCTTCCAGTATCAAGTGGAGCTACCTCTGGTTTAGATATGCTACTCAATGCACAGCACTTTCATCTTGGGAACAACCACCTCTCAGGAGATATTCCTCCAGAACTTTTCAGCTCAAATATGGCTCTGATACATTTGATCTTGAATAGCAATGAACTTACTGGCAATATTCCTGATACACTTGGACGTGCTCAAAATCTTACGGTGGTGCGCTTGGAAAATAATTCTTTAACTGGCTTTGTACCTCAGAATCTGACAAACCTCCACAATGTTACAGACCTGATCCTGTCCAACAATAATCTGTTGCGTACCATTCCAAACCTTAGTGGAATGACTGCTCTCCAATACTTGGATATGAGCAACAATAGCTTTGAGCCAATTGAATTTCCATCATGGCTTCAAAATTTACCGAGTTTAAAATCACTAATAATGGAAAACACAAATCTTGAAGGGCAGATTCCTGCTGCATTTTTTAGTTTAGCCAATTTAAAGGCTGTCACAACTGAAGCATATACTTTCATTCTTGGTCTTGATAACTATGGACTTGAAAGTTCAAGGAAGTCATCAAACACCAGAATCATAATTGGAGCTGCGGTTGGTGGTTCTGTGTTGCTTGGGCTATTTCTCCTAGCAGGTGTTTATGCGTTTTGCCAAACAAGAAGAGCAGAAAAGGCAATTGAAGAAAGCAATCCATTTGGACACTGGAATCTAAGTCACAATAGTAGTACCAAACCTCAGTTACATGGAGCAAGGAGGTTCTCTTTCAAAGAACTTGAGGAATACACGAACAATTTTTCACAAGCCAATGAGATTGGATCTGGGGGTTATGGGAAGGTCTCTCGGGGAACTCTTCCCAATGGACAACTAGTTGCAATAAAACGAGCTCAGAAACAATCAAATCAAGGTGGACTTCAGTTTAAAGCCGAGATTGAACTCCTTTCAAGAGTCCACCATAAGAATCTGGTTAGCCTTGTGGGATTCTGCTTCGAGCGAGGAGAACAAATGCTAGTTTATGAATTTGTTCCTAATGGAACCTTGAAGGAGAGCATCTCAGGGAAGTCCGGTATAAGATTAGACTGGACTAGAAGGTTAAAAGTAGCCCTTGATACTGCAAGGGGTTTGGCTTATCTCCATGAACATGCCAATCCTCCTGTTATACATAGAGACGTTAAATCAACCAACATTTTGCTGGATGAACGCTTGAATGCAAAAGTTGCCGATTTCGGTCTTTCCAAGCCTATGGCCGATTGTGAAAAAGATCACGTTACTACACAAGTTAAAGGAACAATGGGCTACTTGGATCCAGATTATTACACAACTCAACAGTTGACTGAGAAAAGTGATGTTTATAGCTTTGGAGTGCTAATATTGGAGCTGATAACTGCAAGAAAACCAATACAAGGAGGGAAACATATTGTGAAAGTATTTAGGAGTACAATTGATAAGACCAAAAACTTTCATGGCCTTCAAGAAATTCTTGACCCAGCTCTTGTTGGCTTAGGCTCCCCATTGATGAAACTGGAGAACTTCGTTGATCTTGCGATGAAGTGTGTTGAGGATTCAGGAGCAGACCGACCGACGATGAGCAATGTAGTGAAAGAAATAGAAAGCATGTTGAACTCTGCTGGTTTGAATTCTATAGCTGAATCATCAGCATCTAATTCAGCTAGCTTTGAGGAGGTGAGTAATTTGACTTCACAGCTTGTCCTCAACAGCAATGAGTCTTAG 4755 0.4097 MIRLFRPTNCTTRSCISLSAHSISSQLTHLHHYQSTASIEFDSHFYAATLQKCIQNGDYDSGKGLHCHIIKTGASLDLFAFNVLLNLYVKSDSLSDASQLFDEMPSSNTVSFTTLAQGYMRSLQFPAALDLFLRLFRGGHQLNPFVFTSILKLLVSMDSAQMCFAIHSCIYKLGYHSDAFVGTALIDAYSVCECVEIARNVFDDILYKDMVTWTGMVACYAENDCFYRSLQLFSYMRLIGYKLNNFLFTAVLKSCLGLQAFRLGMSIHACALKTHHEQDLYVGLALLELYSKSQDLDAARQFFEEMPKNDLIPWSLMIARYAQSDKSSEALELFQRLWQTSIVPNQYTFASVLQACANLPALNLGGQIHSYVLKVGLDSNVFVSNALMDVYAKCREMENSMKLFVESPEHNDVTWNTMIVGYVQLGDEEKALNMFVSMLAYPIQPTEVTYSSVLRACASLTSLKQGHQVHSLTVKTIYDKDTVVANSLVDMYAKCGSIRDARIVFDKMGKRDEVSWNAMICGYSMHGLGVEALNMFEMMQQSNCKPNKLTFVGVLSGCSNAGLLDKGQELFKSMMQDYGIEPCIEHYTCMVWLLGRSGHLEKAVKLIGEIPFQPSVMVWRALLGACVIHNDIDLGTVCAQRVLEMDPHDDATHVLLSNMYATARRWDGVASIRKIMHIKRVRKEPGLSWIEDQGVVHYFTAGNTNHPDIKLISAMLEWLNMKTREEGYVPNINAILLDMEDAEKTRLLWVHSERLALAFGLIRLPRGCPIHIIKNLRICVDCHIVMKLISKIVQRDIIIRDMNRFHHFQHGICSCGEVVYANDHVISSSSVAKERKVHEWLCLPLLLNFLLLSFAESASMDDDVSALNSLKNLMRKVPQSWESSDPCNGWEGITCTQSRVTSIKLAGMDLNGQLSADIGSFSELQALDLSFNKYLGALLPKEIGSLKKLEELFLVGCGFTGPIPDEIGSLLELAYLSLNSNSFSGRIPASVGNLSKLQWLDLTDNQLVGPLPVSSGATSGLDMLLNAQHFHLGNNHLSGDIPPELFSSNMALIHLILNSNELTGNIPDTLGRAQNLTVVRLENNSLTGFVPQNLTNLHNVTDLILSNNNLLRTIPNLSGMTALQYLDMSNNSFEPIEFPSWLQNLPSLKSLIMENTNLEGQIPAAFFSLANLKAVTTEAYTFILGLDNYGLESSRKSSNTRIIIGAAVGGSVLLGLFLLAGVYAFCQTRRAEKAIEESNPFGHWNLSHNSSTKPQLHGARRFSFKELEEYTNNFSQANEIGSGGYGKVSRGTLPNGQLVAIKRAQKQSNQGGLQFKAEIELLSRVHHKNLVSLVGFCFERGEQMLVYEFVPNGTLKESISGKSGIRLDWTRRLKVALDTARGLAYLHEHANPPVIHRDVKSTNILLDERLNAKVADFGLSKPMADCEKDHVTTQVKGTMGYLDPDYYTTQQLTEKSDVYSFGVLILELITARKPIQGGKHIVKVFRSTIDKTKNFHGLQEILDPALVGLGSPLMKLENFVDLAMKCVEDSGADRPTMSNVVKEIESMLNSAGLNSIAESSASNSASFEEVSNLTSQLVLNSNES 1584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0175 1584 Pfam Protein tyrosine and serine/threonine kinase 1277 1543 IPR001245 GO:0004672|GO:0006468
Lele34g0175 1584 ProSiteProfiles Protein kinase domain profile. 1274 1548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g0175 1584 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 362 476 - -
Lele34g0175 1584 Gene3D Phosphorylase Kinase; domain 1 1244 1349 - -
Lele34g0175 1584 FunFam Pentatricopeptide repeat-containing protein mitochondrial 263 361 - -
Lele34g0175 1584 Pfam PPR repeat 314 337 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat 385 406 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat 211 240 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat 484 511 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat 586 610 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat 285 310 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat 80 107 IPR002885 -
Lele34g0175 1584 Pfam Leucine rich repeat 1075 1132 IPR001611 GO:0005515
Lele34g0175 1584 SMART serkin_6 1274 1548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g0175 1584 Gene3D Ribonuclease Inhibitor 859 1019 IPR032675 -
Lele34g0175 1584 SUPERFAMILY Protein kinase-like (PK-like) 1260 1554 IPR011009 -
Lele34g0175 1584 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 166 260 - -
Lele34g0175 1584 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 1350 1561 - -
Lele34g0175 1584 Gene3D Tetratricopeptide repeat domain 367 465 IPR011990 GO:0005515
Lele34g0175 1584 Gene3D Tetratricopeptide repeat domain 263 364 IPR011990 GO:0005515
Lele34g0175 1584 Gene3D Tetratricopeptide repeat domain 162 262 IPR011990 GO:0005515
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Lele34g0175 1584 FunFam Pentatricopeptide repeat-containing protein At2g40720 33 160 - -
Lele34g0175 1584 ProSitePatterns Protein kinases ATP-binding region signature. 1280 1302 IPR017441 GO:0005524
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Lele34g0175 1584 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 485 714 - -
Lele34g0175 1584 Gene3D Ribonuclease Inhibitor 1020 1179 IPR032675 -
Lele34g0175 1584 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Lele34g0175 1584 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Lele34g0175 1584 TIGRFAM PPR: pentatricopeptide repeat domain 80 108 IPR002885 -
Lele34g0175 1584 Gene3D Transferase(Phosphotransferase) domain 1 1350 1569 - -
Lele34g0175 1584 FunFam Leucine-rich repeat protein kinase family protein 1017 1116 - -
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 511 IPR002885 -
Lele34g0175 1584 FunFam Leucine-rich repeat protein kinase family protein 1243 1349 - -
Lele34g0175 1584 CDD STKc_IRAK 1280 1547 - -
Lele34g0175 1584 Pfam DYW family of nucleic acid deaminases 727 817 IPR032867 GO:0008270
Lele34g0175 1584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1394 1406 IPR008271 GO:0004672|GO:0006468
Lele34g0175 1584 Pfam Leucine rich repeat N-terminal domain 861 895 IPR013210 -
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Lele34g0175 1584 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 209 756 - -
Lele34g0175 1584 Gene3D Tetratricopeptide repeat domain 23 161 IPR011990 GO:0005515
Lele34g0175 1584 FunFam Leucine-rich repeat family protein 862 1016 - -
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Lele34g0175 1584 Gene3D Tetratricopeptide repeat domain 466 575 IPR011990 GO:0005515
Lele34g0175 1584 Gene3D Tetratricopeptide repeat domain 576 698 IPR011990 GO:0005515
Lele34g0175 1584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 582 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat family 512 559 IPR002885 -
Lele34g0175 1584 Pfam PPR repeat family 411 458 IPR002885 -
Lele34g0175 1584 Pfam E motif 629 691 IPR046848 -
Lele34g0175 1584 SUPERFAMILY L domain-like 880 1173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0175 Lele-ChrLele34 1423337 1437844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0175 42 817 Glycoside Hydrolase AT3G49170 33.797 1.08e-151 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Lele34g0175 PK_Tyr_Ser-Thr 9.8e-46 CL0016