Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0142 ATGGACGAGCAGAAGCGAAGCGTGCCGGTTCTGCCATGGATGCGGGACCCTGTTGATGTCACGTTATCTGAAGAATGCCCTCTCGAATGCGTTCCTTGTCTTCACCCCAAGTTGAAGTTGGCATTGCAGAATATGGGCATCTCTATGCTCTTTCCTGTGCAAGTTGCAGTTTGGGAAGAGACCGTTGGTCCTGGTAATTTTGAGCGAGATCTTTGTATAAATTCTCCCACTGGAAGTGGCAAAACTTTAGCTTATGCTCTGCCAATTGTGCAAATGCTGTCAAACCGTGTTGTAAAATGCTTGCGAGCTTTAGTGGTGGTGCCCACTCGTGATCTTGCCTTACAGGTCAAAGAAGTTTTTGACGCCATTGCGTCTCCATTAGGTTTACATGTTGGCTTGGCTGTTGGCCAATCTTCAATAGATGATGAGATTTCTAAGCTTGTGGATATACCAGGATATGAGGTAGGCATGTGTTACGATCCGGAAGATATATCTCTCAATTACCAACTTGGCTTCCAAAATAAGGTGGATATATTGGTAGCTACTCCTGGAAGGCTCATGGATCACATCACCACTACTAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGCTTCTCCGGGAGGCCTACCAATCTTGGTTACCTACCGTGTTGGAACTAACTCGATCTAAGGATGGGAATATTTATCCACCAGCTGGTTCGTTTCTTCTTAATTCATTTAGTGCATTAAGCACTAGAAGGAGATGTGGGCCTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGTTGGCAAAAATGGTTCTATCTGCAACAATAACCCAGGACCCAGGAAAGCTTGTTCAACTTGATCTACATCACCCAATATTCTTGAAAGCTGGGCAAATGCGTTATAGGCTTCCTGAAAATTTGGAATCACTTAAAGTGATCTGTGACACGAAGATCAAACCCTTGTATTTAGCTGCCCTTTTAAAAACATTGGGAGGAGAAAAATGCATAGTTTTTACGAAATCTGTGGATTCAACACATCGTCTGTGCAAATTACTGAACTATTTCCGTGATCTTCAAATTAAGATCAAGCAATATTCTAGTCTTCAACCTCAACGTATAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGTGTTTCAAGTGCTTGTGTGTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTTATTAATTATGACATGCCAAAATACATAAAGACTTACGTTCATCGAGCTGGTAGGACTGCAAGAGCTGGGCAGACCGGTCGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGTTGCACAAGGCTGATAACAGTTCTTGCTCTGATTACACTGTGCCCTCCAGTTTGATTGAAGAACTTCACCCTACTTACCAATCAGCGCTGAAAAGATTTAAAGAGACAATTTCAGAAGCCAGAAAGAAGAAACCCAAGAGCAGTTCAGAGACTTCTCAAGCAAACAAAGTGAATGAAAAAGAGCATACAGGGGAATAG 1557 0.4258 MDEQKRSVPVLPWMRDPVDVTLSEECPLECVPCLHPKLKLALQNMGISMLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIDDEISKLVDIPGYEVGMCYDPEDISLNYQLGFQNKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDGNIYPPAGSFLLNSFSALSTRRRCGPERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESLKVICDTKIKPLYLAALLKTLGGEKCIVFTKSVDSTHRLCKLLNYFRDLQIKIKQYSSLQPQRIRSKTLKEFRKGVFQVLVCSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEARRFKKLLHKADNSSCSDYTVPSSLIEELHPTYQSALKRFKETISEARKKKPKSSSETSQANKVNEKEHTGE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0142 518 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Lele34g0142 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 453 IPR027417 -
Lele34g0142 518 MobiDBLite consensus disorder prediction 490 518 - -
Lele34g0142 518 SMART ultradead3 46 316 IPR014001 -
Lele34g0142 518 Gene3D - 26 308 IPR027417 -
Lele34g0142 518 PANTHER RNA HELICASE 34 490 - -
Lele34g0142 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Lele34g0142 518 CDD SF2_C_DEAD 315 441 - -
Lele34g0142 518 CDD DEADc_DDX51 38 294 - -
Lele34g0142 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Lele34g0142 518 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Lele34g0142 518 SMART helicmild6 352 433 IPR001650 -
Lele34g0142 518 Gene3D - 311 517 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0142 Lele-ChrLele34 1134794 1139737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0142 70 448 Eukaryotic Initiation Factors Gene Family AT3G13920 24.737 3.75e-27 111