LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele34g0141	ATGACGTCTCGTACCGGAACTTCTAGCAGCAAAACCCGGGTGGGAAAGTTCGAGCTGGGTCGGACACTGGGTGAGGCCAGTTTCGCCAAGGTAAAGCTTGCCCGGAATGTCGATACCAGAGAGAATGTAGGCATCAAGATTCTTGACAAGGATAAGCTTCTCAAACACAAAATGGTTCGCCAGGTGATGGCTAGCAAGACAAAGATATATGTTGTACTAGAATTTGTGACTGGTGGGGAACTGTTTGATAAAATTGCAAGCAAGGGCAGGTTAAAAGAAGATGAAGCAAGAAAATATTTCCAGCAGCTTATATGTGCTGTAGAATACTGTCACAGTAGAGGTGTTTGTCATAGGGACCTAAAGAAGGGATATGTGCCTCCTAGATTCGAGCAAGCTGATGTTAGTCTTGATGATGTAGATGCTATTTTCAGCGAATCAGCGGTACAAGATTCTCAAAATTTTGTCGTTGAGAGGCGAGAAGAGGCACCAGCGACACCTATGGCTATGAATGCTTTTGAACTTATCTCTACGTCTCAAGGCCTTAACCTTAGTAGTCTTTTCGAGAAACAAATGGAGATCAGATCACAATTGGTTAATGGCATATTCTTGGAAACAAGATTCACATCCAAATGTCCAGCGAATGAGATAATTTCAAAAATTGAGCAAACTGCAACACCTATGGGTTTTGATGTTAGGAAGAATAACTACAAGTTAAAGCTTCAAGGGGAAAAGAGTGGACGCAAAGGACATCTATCCGTTTCGACTGAGATATTTGAGGTTGCCCCTTCACTTTGCATGGTTGAGCTTCGCAAGTCTGGAGGAGATACTCTGGAATTTCATAAGTTCTACAAGAACCTATCTACGGGGCTGAAAGATGTCGTTTGGAAAGCAGAACCTATAGATGAAGAACCAAAGGGTGGTACTGTAAAAAAATAG	936	0.4241	MTSRTGTSSSKTRVGKFELGRTLGEASFAKVKLARNVDTRENVGIKILDKDKLLKHKMVRQVMASKTKIYVVLEFVTGGELFDKIASKGRLKEDEARKYFQQLICAVEYCHSRGVCHRDLKKGYVPPRFEQADVSLDDVDAIFSESAVQDSQNFVVERREEAPATPMAMNAFELISTSQGLNLSSLFEKQMEIRSQLVNGIFLETRFTSKCPANEIISKIEQTATPMGFDVRKNNYKLKLQGEKSGRKGHLSVSTEIFEVAPSLCMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKAEPIDEEPKGGTVKK	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele34g0141	311	ProSiteProfiles	Protein kinase domain profile.	17	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele34g0141	311	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	160	285	-	-
	Lele34g0141	311	Gene3D	Phosphorylase Kinase; domain 1	6	62	-	-
	Lele34g0141	311	Gene3D	Phosphorylase Kinase; domain 1	63	79	-	-
	Lele34g0141	311	Pfam	Protein kinase domain	60	122	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele34g0141	311	SMART	serkin_6	17	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele34g0141	311	Gene3D	Transferase(Phosphotransferase) domain 1	80	122	-	-
	Lele34g0141	311	SUPERFAMILY	Protein kinase-like (PK-like)	14	121	IPR011009	-
	Lele34g0141	311	Gene3D	Kinase associated domain 1, KA1	164	296	-	-
	Lele34g0141	311	Pfam	NAF domain	166	233	IPR004041	GO:0007165
	Lele34g0141	311	FunFam	Non-specific serine/threonine protein kinase	163	296	-	-
	Lele34g0141	311	CDD	CIPK_C	170	292	-	-
	Lele34g0141	311	ProSiteProfiles	NAF domain profile.	164	188	IPR018451	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele34g0141	Lele-ChrLele34	1128010	1132513	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele34g0141	120	308	CBL-interacting serine-threonine protein kinases	AT1G30270	69.312	3.08e-85	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Lele34g0141		NAF	2.1e-23	CL0573