Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0116 ATGCACCATCGCCACACTTCCTTTCAGATAACACAACTTGAAGCGTTTTTCAAGGATTGCCCCCATCCTGATGAAAACCAACGACGCCAGTTAGGCAGGGAGCTGGGCCTTGATACAAGACAAATCAAGTTTTGGTTTCAGAATAAGAGAACTCAAACAAAGACTCAAAATGAGAGAGCAGATAATGCAATACTTCGAGCTGAAAATGAAAGGATGAAATGTGAGAATATAGCATACAGAGAGGCACTGAAGGACATGATTTGCCCCTCTTGTGGGGGTCAACCCTTTGGGGAAGAAGAACTTGGCCGTCATGTTCGAGAGCTGCACCAAGAGAATCTTCGATTAAGACAAGAGTATGACAGAATATCGGACATTCTTGCCTTCTGTATTGGCAGACCAATATCAGAACCAGAATCCTCTGTGGATCCTTCCTCCTCTGCCGGATCTCCGCTGCTGGAACTGTCCCCGGGGAATTCCCTGAACCCGGAAAGCATCGGAAGTCCTATTAGTCTTGACATGGACTTAGGTTCAGCTATCACAGTTTCAGATGAGAACATGTTTCCGTCGATAATGGGAGAAGTCACAGACGTTGAAAAGGATCTAATGATAGAGGCCGCTCACAACGCCATGGATGAATTACTGAAGCTTATGCATAATGATGAGCCCTTATGGATGAAGACTTCTCTTGGTGGCCAATTTGTTCTTCACCGTGAGAGCTATGAAAAGCTATCTCCTAGGGCTCATCACTACAGGAGTTCCTATGCTCGTAGAGAAGCTTCAAAAGATTCACGAATGATTTGGATCAATGCCATGCAATTGGCCCACATGTTCTTAGATCCGAAGAAGTGGCTGAATCTGTTCCCCACAATTGTTAGAAAAGCAGAAATACTTGAAGTGCTGGATGTTGGATGGTCATCAAGCAGATCTAGAGCTTTGCAGCTGATGAGTGAAGAGAGGCACAGTCTGTCACCATTGGTGGCAGCTCGTGAGTTCTGTTTTATTCGATACTGTCAACAAATTGACGCAGCAGATGCCGAATGGCTTCTCCAAGTGATCAGTTCTGGAGATGGAAGGAGGAGATTCATGGAGCTGACTAATCGAATGATAAAGGACTTCTGTCAAGCTCTGAACAAGTCAGAGAAGGAGTTCCCTGATTTATGTGAAGCGAATAACAGTGGAATTAGGGTTTCTGTTCGGAGAAACAGAGAAGGAGGTCAGCCTGAAGGCATGGTTATTACTGCTTCAACATCTCTCCGGCTTCCCGTTATGCACAGAACTGTTTTTGAATTCCTCAACGATGACACAAGAAGAGCTGAAGGGAACAATCGACCCTGCTCTGGTGCCAATCCTTCCGTCGGGCGGGGCTTTGTGATCTCCGGGGACGGTCACCGGCATCATCCCGGCCCGTTATTTACTGGACAATCTAGCAGCTCATCTAGCTCGACTGAAGGCGGCTCATCATTCTCATCACGAGGAAGTCTTCTGACAGTGACTTACCAGATTCTGGTTTGCAGAAATGACGCAGTGAGGGAACTGAACGTTGAAACTGTGACCACAATCAACTCGCTCCTCACCTCAACTGTTGAGAAGATTAAGGATGCTTTCAACTATGCTGTTCTCGACTAA 1626 0.4619 MHHRHTSFQITQLEAFFKDCPHPDENQRRQLGRELGLDTRQIKFWFQNKRTQTKTQNERADNAILRAENERMKCENIAYREALKDMICPSCGGQPFGEEELGRHVRELHQENLRLRQEYDRISDILAFCIGRPISEPESSVDPSSSAGSPLLELSPGNSLNPESIGSPISLDMDLGSAITVSDENMFPSIMGEVTDVEKDLMIEAAHNAMDELLKLMHNDEPLWMKTSLGGQFVLHRESYEKLSPRAHHYRSSYARREASKDSRMIWINAMQLAHMFLDPKKWLNLFPTIVRKAEILEVLDVGWSSSRSRALQLMSEERHSLSPLVAAREFCFIRYCQQIDAADAEWLLQVISSGDGRRRFMELTNRMIKDFCQALNKSEKEFPDLCEANNSGIRVSVRRNREGGQPEGMVITASTSLRLPVMHRTVFEFLNDDTRRAEGNNRPCSGANPSVGRGFVISGDGHRHHPGPLFTGQSSSSSSSTEGGSSFSSRGSLLTVTYQILVCRNDAVRELNVETVTTINSLLTSTVEKIKDAFNYAVLD 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0116 541 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Lele34g0116 541 ProSiteProfiles 'Homeobox' domain profile. 1 56 IPR001356 GO:0003677
Lele34g0116 541 SMART HOX_1 1 60 IPR001356 GO:0003677
Lele34g0116 541 FunFam Homeobox-leucine zipper protein HDG1 1 72 - -
Lele34g0116 541 Pfam Homeodomain 4 54 IPR001356 GO:0003677
Lele34g0116 541 Coils Coil 50 77 - -
Lele34g0116 541 MobiDBLite consensus disorder prediction 438 490 - -
Lele34g0116 541 Pfam START domain 206 348 IPR002913 GO:0008289
Lele34g0116 541 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 351 439 IPR042160 -
Lele34g0116 541 Gene3D - 1 74 - -
Lele34g0116 541 MobiDBLite consensus disorder prediction 138 166 - -
Lele34g0116 541 MobiDBLite consensus disorder prediction 136 166 - -
Lele34g0116 541 CDD homeodomain 3 57 IPR001356 GO:0003677
Lele34g0116 541 Coils Coil 105 125 - -
Lele34g0116 541 MobiDBLite consensus disorder prediction 470 490 - -
Lele34g0116 541 SUPERFAMILY Bet v1-like 196 341 - -
Lele34g0116 541 ProSiteProfiles START domain profile. 195 349 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0116 Lele-ChrLele34 917238 923748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0116 335 536 Homeobox Transcription Factor Family AT1G73360 27.239 2.40e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele34g0116 START 1.7e-12 CL0209