Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0039 ATGGGGAAAATGTTGAGCGCGAGATGGTACACGAAAGCCGCCTATCTCGCTTCGTCGAGTTTTCGTTTCTCTCCGAAGCAGAAGAAGATTTCAAGCTCTGCGAGGGTGTGGTATTGTGTTCTCGTCCCATTTTCAGATTTAGCTCAAGATTTGTGCAGAGTCTTGCACGTGAATTTGGAAACTATGACTTCATCTGATCAGGACCTCATCGATAACGAAGCTAATGAGCACCAACAGCAATCAAACTCAGAGATGCAGTCTTCACCTACAAATGGAATTTCTGATTCAGGTATTGCTGCCCAGAATGTCCAGTATGCAGTGCCTCCTCCACAGATTGGAACTGGACATGCTATGGCACCAGTTTATCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACACAACCTTATCCCCCGCAACCCTATGGAACACAGCCAATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGCCTCCCTCTACCAACGGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGTAGGCAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAGGAATCGCAAGCCGTACTTGCATGAATCCCGGCATTTGCATGCACTGAGAAGAGCACGAGGATGCGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGACGACCAACAGAATGAGGTTTCATCAACAGATAATTCACTGTCCAATACCAATCTCAATCCTGACCAAAATGATATTGCTTCATCAGATAGGATTTCCTAA 804 0.4453 MGKMLSARWYTKAAYLASSSFRFSPKQKKISSSARVWYCVLVPFSDLAQDLCRVLHVNLETMTSSDQDLIDNEANEHQQQSNSEMQSSPTNGISDSGIAAQNVQYAVPPPQIGTGHAMAPVYPYPDPYYRSIFAPYETQPYPPQPYGTQPMVHLQLMGIQQAGLPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKSDDQQNEVSSTDNSLSNTNLNPDQNDIASSDRIS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0039 267 MobiDBLite consensus disorder prediction 231 267 - -
Lele34g0039 267 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Lele34g0039 267 Gene3D - 171 232 - -
Lele34g0039 267 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Lele34g0039 267 MobiDBLite consensus disorder prediction 74 94 - -
Lele34g0039 267 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Lele34g0039 267 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Lele34g0039 267 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Lele34g0039 267 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Lele34g0039 267 MobiDBLite consensus disorder prediction 226 267 - -
Lele34g0039 267 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 70 254 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0039 Lele-ChrLele34 306951 310978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0039 62 267 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.250 1.24e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele34g0039 CBFB_NFYA 1.5e-25 No_clan