Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0027 ATGAGTCGGGGAGGGACACTGATCCTTTCATTCCATAGCCACGTCCCACGTGTCCTTTTCTGCTTCCTTTATGTAACCAAAACCATGCAATTCCTCTACTCTCAGCTCCATTCTTCAAACTCACAAATCCACTCACCACATATGACAGAGGTCTCTGCTAATTCACACAAAAGAAGGTCTTCTATGGAGACTCTTGTGAATCCTTCTGCATCCAAGATTACAAGATGCAATCCAGAAGAAACTTTGTTAGATAAAATGAAGCAGCCTGAAGAATACTTTACTAGAGATGAAAAAGATGATGAGGACGAGGATAACAACGAAAATGAGCATGGTGAAGATGCTGAGGTTGGCAATGATCTTCAAGATGAGGCAAAGTACTTGTTAGGAGACGAAGGTCCAACTTCTACAGAGGATGAACTTGAAAAAGGTCTTCCAGCAGAAGATGCGGATGAGGATAATGAGTCTGCTAGACATTTCAGCCATGGATCTTACCTGGTCCAAGGAAAACTAGACCATGGAATGGAGGATTATATTTTTGCTGAACACAGGAGCAGCAATAGCTATGACTTAGGACTGTATGCAATCTTTGGTGGCCACGCGGGTCGAGCTGTCGCAAAATACTTGCAAGGCCATCTATTTGGCAGAATATTGAATGAGCCTGACTTCTGGAAAAATCCAGCACGTGTTCTTAAGAGATCATGCGAAGCTATAGATGAGGAGATCCTAGAAAAGGTAGCAGATTCACGAGGGGGATCAACAGCTGTTGTAGGAATACTTGTTAATGGAGTGAAGTTACTGGCAGCCAACGTTGGTGATTCTCGAGCAATATTATGCAGAAACAGCGTGGGGAAACCAATAACAGTAGATCATGAGCCACAGAGAGAGAAAGATCTTGTTGACAGCAAGGGAGGCTTTGTGTCTGAGGCACCTGGGTATGTTCCGAGAGTGGATGGGGTATTAGCAATGAGCAGGGCATTTGGGGATGGAAGATTGAAGGAACACATTACTGCAGAACCAGATGTGATGGTTCAAAACATCACTGATGACACTGACTTCATCATTTTGGCTAGTGATGGCCTCTTGAAGGTGATGACTAACGAAGAGGCTTGTGAGTGCGTGAAGGACATGGATGATGCAAGTAAGAAGTTGGTTAAAGAAGCATTAGCCCAAGGAAGCTATGATGATATTTCATGCATTGTTCTTGACACCCTCCGGAGGCTCCGCAAGAAGCTGGTTGTGTCGCACGAGTCGGGGTATCAAGGAAATGAAAACAAAAAGAAGAAGAAGAAGTCCAAGTCGGATTTAGCTGGTGTGTTGAGGATTATGGAGATTTATGAGTTGGCTTTGAAGCGGTATAAAGGCGATATTGATCTTTGGTTTCGGTATCTTGAGTTTTGCAGACTGAAGAAAAATGGGAGGATGAAGAAGGCCCTCGCAAAACTTGTTAGGTTTCATCCAAAGGTACCTGGAGTTTGGATATATGCTGCAGCTTGGGAATTTGACCATAACTTAAATTTTGCAGCTGCCCGTGCTCTAATGCAAGAAGGACTTAGGGTTTGCCCAACTTCAGAACAGCTTTGGGTAGAGTATCTTCGGATGGAACTTACATATCTTAACAAGTTAAAGGCTAGAAAGGTTGCTCTTGGTGAGGATGAGGGTACTTTGACTCGCGATCATAGCGTTGTTAATGAGAAACAACAGAGAGATGAAAATGAAGATTCATTCATGTCCTTAAATTTTAAAACAGAAAATAATGAGAATTCAAATTCTGATTCAAAAAAGAAACAAGCAATGTTTGCTGAGCATGGTACGAGCATCTTCCAAACTATCTACAGTGGTGCACTTGAAGCTGTCCCTTCAAGTCTTAATCTTCGGCAGCGATTTCTTGAAATACTGGAGGGTACTAAGTTAGCAAATTCTGAAGAAATGTGTAAGGAGATACTGAATGGCATGAAGAGAGATTTTTTGATAGAGCCAGAGTTCTGGGATTGGCTTGCAAGACGTGAATATAACCCTGAAAATCTGCAGGAGATGAGTGAAGAAACCATCATTCCCCATATGCAAAAGGCAATTCAGGTTTATGAGGAGGCTTTGAAAAGTGCGCCCTCAGGCAATGTGTTTAGGTTGTATGCAAACTGTCTAATGGGTTTTATAGCTCATAAAGGGGGAGAAACCAATATATCTGGGCGGTCAGATGAAGCTGTAAATTATATATCGCTTCTCTTGAGAATATACGAAAGGGCTGAAAGTATGGAGTGCCTTACTGAAGATCTTGCTTGTGATTATTTGTCATTTTATTTGCAATTGGGACAGTTGGATGAAGCCAGGGAGCTGGCGACAAAGCTTTGCTCTGGAAAACTTGCAGAGTCTGTGCAATTATGGTTATTAAGGATAACTATAGAGATTAAATGCATAACAAGGAGTTCTGCTTCACCTAGTGATGCTGATCTGTTATCCCTCTTTGAACTCCTAAGATACAGTTTGAGAAAATTTCCCGTTTCAAATTCTGAGAACTTGTGGGTAATGGCCCTTAAATTCTATGCAAATCAAAAACCGTATTTTGATAAGCTGTTGGAGATTTCTGTCACTACTTTGGCCAGGGATGGTGGCAGTGAAAATGGATTTTCCCTCTCCTCTGCCATTGTAAAGTTTATCCTTCAAAAGGATGGAATTCATCATGCCAGAGACATGTATAAGCGATTTCTAGCTTTACCACATCCTGGCCTTGTTTTATATAAACACTGCATTGACCTTGAAACAAACCTTGCTTCAATTGGAGATAAAGATGGTCTAGTGAACGCTAGAAAATTATTCGAATCTGCACTTGCAACTTATGACCAAGATATCAAATCGTGGCAAGATTACTATCAAATGGAAAGCAAGTTAAAACCTTAG 2895 0.4155 MSRGGTLILSFHSHVPRVLFCFLYVTKTMQFLYSQLHSSNSQIHSPHMTEVSANSHKRRSSMETLVNPSASKITRCNPEETLLDKMKQPEEYFTRDEKDDEDEDNNENEHGEDAEVGNDLQDEAKYLLGDEGPTSTEDELEKGLPAEDADEDNESARHFSHGSYLVQGKLDHGMEDYIFAEHRSSNSYDLGLYAIFGGHAGRAVAKYLQGHLFGRILNEPDFWKNPARVLKRSCEAIDEEILEKVADSRGGSTAVVGILVNGVKLLAANVGDSRAILCRNSVGKPITVDHEPQREKDLVDSKGGFVSEAPGYVPRVDGVLAMSRAFGDGRLKEHITAEPDVMVQNITDDTDFIILASDGLLKVMTNEEACECVKDMDDASKKLVKEALAQGSYDDISCIVLDTLRRLRKKLVVSHESGYQGNENKKKKKKSKSDLAGVLRIMEIYELALKRYKGDIDLWFRYLEFCRLKKNGRMKKALAKLVRFHPKVPGVWIYAAAWEFDHNLNFAAARALMQEGLRVCPTSEQLWVEYLRMELTYLNKLKARKVALGEDEGTLTRDHSVVNEKQQRDENEDSFMSLNFKTENNENSNSDSKKKQAMFAEHGTSIFQTIYSGALEAVPSSLNLRQRFLEILEGTKLANSEEMCKEILNGMKRDFLIEPEFWDWLARREYNPENLQEMSEETIIPHMQKAIQVYEEALKSAPSGNVFRLYANCLMGFIAHKGGETNISGRSDEAVNYISLLLRIYERAESMECLTEDLACDYLSFYLQLGQLDEARELATKLCSGKLAESVQLWLLRITIEIKCITRSSASPSDADLLSLFELLRYSLRKFPVSNSENLWVMALKFYANQKPYFDKLLEISVTTLARDGGSENGFSLSSAIVKFILQKDGIHHARDMYKRFLALPHPGLVLYKHCIDLETNLASIGDKDGLVNARKLFESALATYDQDIKSWQDYYQMESKLKP 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0027 964 SUPERFAMILY TPR-like 446 851 IPR011990 GO:0005515
Lele34g0027 964 MobiDBLite consensus disorder prediction 95 110 - -
Lele34g0027 964 MobiDBLite consensus disorder prediction 111 126 - -
Lele34g0027 964 SMART PP2C_4 150 401 IPR001932 -
Lele34g0027 964 CDD PP2Cc 159 402 IPR001932 -
Lele34g0027 964 Pfam Protein phosphatase 2C 171 396 IPR001932 -
Lele34g0027 964 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 399 962 IPR013949 GO:0000462|GO:0030515
Lele34g0027 964 SUPERFAMILY PP2C-like 155 401 IPR036457 -
Lele34g0027 964 SMART hat_new_1 685 716 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 436 468 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 815 849 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 469 501 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 889 921 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 504 536 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 770 803 IPR003107 GO:0006396
Lele34g0027 964 SMART hat_new_1 929 961 IPR003107 GO:0006396
Lele34g0027 964 MobiDBLite consensus disorder prediction 58 76 - -
Lele34g0027 964 ProSiteProfiles PPM-type phosphatase domain profile. 160 403 IPR001932 -
Lele34g0027 964 MobiDBLite consensus disorder prediction 44 157 - -
Lele34g0027 964 Gene3D Tetratricopeptide repeat domain 574 822 IPR011990 GO:0005515
Lele34g0027 964 Gene3D Tetratricopeptide repeat domain 421 548 IPR011990 GO:0005515
Lele34g0027 964 Gene3D Tetratricopeptide repeat domain 823 964 IPR011990 GO:0005515
Lele34g0027 964 MobiDBLite consensus disorder prediction 78 94 - -
Lele34g0027 964 FunFam Probable protein phosphatase 2C 39 152 404 - -
Lele34g0027 964 Gene3D - 142 410 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0027 Lele-ChrLele34 217060 222733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0027 157 367 PP2C-type Phosphatase Gene Family AT2G34740 60.377 6.01e-83 268