Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0008 ATGGCGAAATTCTCTGTCGGAGGGGACGACGATGGGGAGGGACCCAGCAACCCGACTCAAAAGCGACGCAGGATTCCTATTAGCCGCGGCACCGTCGGAGAAGACGAACGACAGGATATCGGAAACCCAAGCGGAATAGGAGACGAAAGAGAAGATATTGTGCAGGAACTAGAAGTGTTTCAAAGTGAAGAAGATCCATGGGACGATGATTCTGGCGATTGCGTTTTAGCCGGATCAAGCGATAGCGGTGAAGAGAACAATGTTTCAGCGCCTGAAAATAGGGATAGGTCCATTTCTGTCACCCTTAGCGACCCTGATGTGTTTGATTGCTGTATCTGCTATGAACCCTTGAGTATCCCCATCTTCCAGTGTGAGAATGGGCATATTGCTTGCTCTTCCTGTTGTGTTAAACTTGGGAACAAGTGTCCCATGTGCTATATGCCCATTGGCTATAACCGTTGCCGAGCTATTGAGAAGGTGCTGGAATCTGTTAAGATATCCTGCCTAAATGTACAATATGGTTGTAAAGAAACTATAACTTACATTAAGAAAAATGCCCATGAAAAGCAATGCATTTATGCTCCTTATACATGCCCACAATCAGGTTGCAACTTTGTTGCCCCATCTAGGGAGTTGTCACTCCACTTTCGCCGTAAACATGGGCTTTCTACGAAATTTTTTACCTATAACTGCTTCTTCTCTATCTTCCTGAGGGTCAATGATGAAGTTGTTGTTCTTCAAGAACAGAATGGTGCCGATCTATTTATGCTCAAGAATAAAGTGCGGGATCTGGGGAATACAGTCAATGTTAGTTGCATTTGTCCCCATTTATTCCAAAAGGCTTGCCATTATGATATTTTGGTCAGATCTCAGGGATGCTGTCTGAAAATACATTGTTTAGTGGAGAACAATCATGGTCGTAAGGCCAATAATACTGCCCCACCAGGGTTTCTTTTGATCCCATCGTGGTTTTTTGGTTCTTCTGGACAGCTCAAATTGGACGTTCGCATTAAGTGTAATATTACCCATCTTGCAGATGTCTAA 1044 0.4397 MAKFSVGGDDDGEGPSNPTQKRRRIPISRGTVGEDERQDIGNPSGIGDEREDIVQELEVFQSEEDPWDDDSGDCVLAGSSDSGEENNVSAPENRDRSISVTLSDPDVFDCCICYEPLSIPIFQCENGHIACSSCCVKLGNKCPMCYMPIGYNRCRAIEKVLESVKISCLNVQYGCKETITYIKKNAHEKQCIYAPYTCPQSGCNFVAPSRELSLHFRRKHGLSTKFFTYNCFFSIFLRVNDEVVVLQEQNGADLFMLKNKVRDLGNTVNVSCICPHLFQKACHYDILVRSQGCCLKIHCLVENNHGRKANNTAPPGFLLIPSWFFGSSGQLKLDVRIKCNITHLADV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0008 347 ProSiteProfiles Zinc finger RING-type profile. 110 145 IPR001841 -
Lele34g0008 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 79 338 IPR044286 -
Lele34g0008 347 Pfam Seven in absentia protein family 153 222 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele34g0008 347 CDD RING-HC_SIAHs 108 145 - -
Lele34g0008 347 ProSiteProfiles Zinc finger SIAH-type profile. 163 221 IPR013010 GO:0008270
Lele34g0008 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 216 IPR013083 -
Lele34g0008 347 MobiDBLite consensus disorder prediction 1 96 - -
Lele34g0008 347 SUPERFAMILY TRAF domain-like 163 337 - -
Lele34g0008 347 SUPERFAMILY RING/U-box 109 152 - -
Lele34g0008 347 MobiDBLite consensus disorder prediction 80 96 - -
Lele34g0008 347 MobiDBLite consensus disorder prediction 27 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0008 Lele-ChrLele34 107513 110091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0008 106 220 C3H Transcription Factor Family AT2G41980 35.897 8.54e-20 86.7