Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1587 ATGGAGGATTACGCGGGTTTAGGAGGTGGAGCATCTGTTAGTATCGGAAGGGAAGAAGAAGAAGAAGATGAATTTTGCAGTTGTTGTGAAGACGAAGAAGAAGAATTATGGAAAGAATCTGAGCAGTCGCGGGTGGAAAAGTTGAAGGAGGACTGTGATGAATCTTCCGTAAAAATGTTCTTCAAGGGCTTGTCTATAGCTGGGGTTGAAAATTCCACTTCTGGGTATTCTGGAATTGGAGTGGTCATGGAAAGACCATCTGGTCTTCCAGCTATCCAGGTGCAGAAAAAACTCGATTTTTATGCAGAAAAGCTATTAGCTGAGTACTTGGCTCTCATTGATGGCTTGCTGGAGGCTATGCAGAATAACATCCACCGTGTTTACGCTTTTACAGATTCTGAGTTATTGTACGATCAGATAACATTTGAGAAGAATCTTGAGATGCCACTTTTGATAGCACTAAGAGAAAGGGTTCTGGAGCATGCCGATAATTTTGAATCATTTGTTCTTAATCTTGTCCCTAGCATTGATCTTCAGAAACCGCTGCAATTAGCTAAAGTAGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAAGTGCTTGAAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCAATAATGGTCACCATGAAATGTTCGCACAAGTTTTGTTCACATTGTTTGAGGGCATATGTTGATGGAAAGGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAGCCAAGATGCAAATATTACATCTCTATTCCAGAATGCAGGTCTTTTCTTCCATTTACCGCTTTTGAGTCTTTGGAGAAAGCCCTTGCAGAAGCAGATTTTTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCTGTTCTGCTTGATCCTCGTGAATGTTTATCAGCTAGGGCGAGTTCATCTAGCCAATCAGGCAATTCTTGTGCTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGCGTACCAGAATTTACCTGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGCTTAGCTCAAAATAAACGATGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTTACTCAAGGTTGTTATCACATGACCTGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCGGAATACAGGGAGGGCCAACAGACTTGTCAGTGTGTGTTTTGGGATGAAGACAACTCTGAAGACTCAGTGACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCCATGCTCATGGATGCATACTCAGACCAAGAACGTTCCCAGCTTGCACTTATTCAACGATTCCTCGCTGGGGGTTTCAGTCTGAGTGACCATCATCCTTACCAATCCCCTCCCCGTTGTACAGACTCCTACGTTGATGCCATGAAGGATCTACATCAGCTTCCATGGCTCGAGCGATTCGTCTCCGTGATAAGCGACAACTACTATGAAGACTATATACAGTAA 1554 0.4356 MEDYAGLGGGASVSIGREEEEEDEFCSCCEDEEEELWKESEQSRVEKLKEDCDESSVKMFFKGLSIAGVENSTSGYSGIGVVMERPSGLPAIQVQKKLDFYAEKLLAEYLALIDGLLEAMQNNIHRVYAFTDSELLYDQITFEKNLEMPLLIALRERVLEHADNFESFVLNLVPSIDLQKPLQLAKVAIGLVSLPIDGGKVLESCSICCEDKPLPIMVTMKCSHKFCSHCLRAYVDGKVQSCQVPIRCPQPRCKYYISIPECRSFLPFTAFESLEKALAEADFSDRIYCPFPNCSVLLDPRECLSARASSSSQSGNSCAECPVCQRFICVDCEVPWHSSMSCEAYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMLMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1587 517 ProSiteProfiles TRIAD supradomain profile. 201 417 IPR044066 -
Lele33g1587 517 MobiDBLite consensus disorder prediction 1 28 - -
Lele33g1587 517 SUPERFAMILY Ribonuclease H-like 73 174 IPR012337 -
Lele33g1587 517 Pfam IBR domain, a half RING-finger domain 283 342 IPR002867 -
Lele33g1587 517 Pfam IBR domain, a half RING-finger domain 362 411 IPR002867 -
Lele33g1587 517 Coils Coil 38 58 - -
Lele33g1587 517 FunFam RBR-type E3 ubiquitin transferase 340 465 - -
Lele33g1587 517 ProSiteProfiles Zinc finger RING-type profile. 205 252 IPR001841 -
Lele33g1587 517 FunFam RBR-type E3 ubiquitin transferase 200 285 - -
Lele33g1587 517 Gene3D - 340 466 - -
Lele33g1587 517 FunFam RBR-type E3 ubiquitin transferase 57 192 - -
Lele33g1587 517 Pfam Reverse transcriptase-like 68 174 IPR002156 GO:0003676|GO:0004523
Lele33g1587 517 SUPERFAMILY RING/U-box 273 347 - -
Lele33g1587 517 Gene3D - 57 190 IPR036397 GO:0003676
Lele33g1587 517 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 464 IPR031127 GO:0004842|GO:0016567
Lele33g1587 517 SUPERFAMILY RING/U-box 203 281 - -
Lele33g1587 517 SMART ibrneu5 269 342 IPR002867 -
Lele33g1587 517 SMART ibrneu5 352 411 IPR002867 -
Lele33g1587 517 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Lele33g1587 517 SUPERFAMILY RING/U-box 355 419 - -
Lele33g1587 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 285 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1587 Lele-ChrLele33 25970285 25973729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1587 56 402 C3H Transcription Factor Family AT2G19610 27.348 6.95e-30 119