Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1581 ATGGCGCATTCAGCAGAGCCTGCATCATCTTTAAGCTTTACCTCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAACATGTGCTCTTCTCACGGCTCTGAACCTGTACCTAACCTTGAAGTGATCAGTTTGAGTAAGCTTAGCTCAAGTTTGGAGCATCTTCTTGTTGATTCGGATATTGATTTTAGTGATGCCGACATCGTTGTTGAAGGAGAAACAGTTGGTGTTCATCGATGTATTCTAGCCTCTAGAAGCAAGTATTTCCACAATTTATTCAAGAAAGATAAAGGATCTTCACAGAAAGAAGGAAAATTTAAGTATTGCATGAATGAATTGTTGCCATATGGCAAGGTGGGACTTGAAGCCTTTCGCATAGTCTTGGGCTATATATATACAGGAAAACTCAAGCCCTCTCCAATGGAAGTGTCAACTTGCGTTGATAATGTCTGTGTCCATGACGCTTGTAGACCAGCAATAAATTTTGCTGTGGAGTTGCTGTACGCCTCTTCCATCTTTCAAATACCAGAATTGATATCACTTTTTCAGCGTCGCCTCCTTAATTTTGTAGGGAAGGCTTTTGTGGAAGATGTCATTCCAATACTCGCTGTTGCTTTCCATTGTCAATTGAGTCAACTTGTTGCTCAATGTGTTGATAGGGTAGCACGATCAAACCTTGATCAAATCTCAATTGAGAAAGAGATTCCCTTAGAACTTGCAGATAAAGTTAAACTGCTTCGCCGCAACTACCATCAGGATGTTGAAAATAACACCTCTGTAGTTGATGACCTACGTCAGAAGAGAATCACTAGAATACATAAGGCTCTAGACTCAGATGATGTCGAGCTTGTTAAACTGCTTTTAACTGAATCGGAGATAACATTGGATGAAGCCAATGCTCTTCATTATGCTGCAGCCTACTGTGATCCTAAGGTTGTTTCTGAGGTTCTAGGTTTGGGGATGGCTGATGTCAACCTTCGGAATTCCCGTGGCTACACCGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCCCTTCTAACAAAGGGGGCTTGTGCATCAGAGGTGACTTTTGATGGTCAGAGTGCTGTTAGCATCTGCAGGAGGTTAACAAGACCAAAGGACTATCATGCAAAAACAGAGCAGGGGAAAGAAACAAACAAAGATCGCATATGCATCGATGTTCTTGAAAGAGAAGTGCGGAGAAATCCAATGGCTGGGGATACAATAATTTCTTCTCATACAATGGCTGATGATCTGAACATGAAGCTACTATATCTTGAGAACAGAGTGGCATTTGCGAGACTATTCTTCCCTTCAGAAGCCAAATTAGCTATGGACATTGCACATGCTCAGACAACATCCGAGTTCGCAGGTCTTTCTGCATCAAAAGGTTCAAATGGGAATTTGGTTGATCTAAATGAGACTCCCTTGGCGCAGAATAAAAGACTTCTTGCCAGGATGGAGACCCTTATGAAAACAGTTGAGACGGGCCGGCGCTATTTTCCTCATTGCTCGGAAGTGCTTGATAAGTTCATGGAGGATGACCTGCCTGATTTGTTTTACCTGGAGAAGGGAACCCCAGATGAGCAAAAAATCAAGAGAGCACGTTTCATGGAGCTGAAAGAAGATGTTCAGAAGGCTTTCAACAAGGACAAAGCTGCTGGGATACCGTCCTCGTCATCCTCATCATCTTTGAGAGGCTCTGTAAATTACAAAGCTAGGAAAGTTTGA 1746 0.425 MAHSAEPASSLSFTSSSHLSNGSVSHNMCSSHGSEPVPNLEVISLSKLSSSLEHLLVDSDIDFSDADIVVEGETVGVHRCILASRSKYFHNLFKKDKGSSQKEGKFKYCMNELLPYGKVGLEAFRIVLGYIYTGKLKPSPMEVSTCVDNVCVHDACRPAINFAVELLYASSIFQIPELISLFQRRLLNFVGKAFVEDVIPILAVAFHCQLSQLVAQCVDRVARSNLDQISIEKEIPLELADKVKLLRRNYHQDVENNTSVVDDLRQKRITRIHKALDSDDVELVKLLLTESEITLDEANALHYAAAYCDPKVVSEVLGLGMADVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASEVTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREVRRNPMAGDTIISSHTMADDLNMKLLYLENRVAFARLFFPSEAKLAMDIAHAQTTSEFAGLSASKGSNGNLVDLNETPLAQNKRLLARMETLMKTVETGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTPDEQKIKRARFMELKEDVQKAFNKDKAAGIPSSSSSSSLRGSVNYKARKV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1581 581 SUPERFAMILY POZ domain 62 188 IPR011333 -
Lele33g1581 581 Pfam NPR1/NIM1 like defence protein C terminal 372 569 IPR021094 -
Lele33g1581 581 Gene3D Potassium Channel Kv1.1; Chain A 37 222 IPR011333 -
Lele33g1581 581 CDD BTB_POZ_NPR_plant 58 190 - -
Lele33g1581 581 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Lele33g1581 581 FunFam regulatory protein NPR3-like 264 404 - -
Lele33g1581 581 PANTHER REGULATORY PROTEIN NPR3 10 570 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele33g1581 581 Gene3D - 262 404 IPR036770 -
Lele33g1581 581 SMART ANK_2a 296 326 IPR002110 GO:0005515
Lele33g1581 581 SMART ANK_2a 267 295 IPR002110 GO:0005515
Lele33g1581 581 SMART ANK_2a 330 362 IPR002110 GO:0005515
Lele33g1581 581 MobiDBLite consensus disorder prediction 559 574 - -
Lele33g1581 581 SMART BTB_4 64 190 IPR000210 GO:0005515
Lele33g1581 581 MobiDBLite consensus disorder prediction 554 581 - -
Lele33g1581 581 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Lele33g1581 581 FunFam Regulatory protein NPR3 38 222 - -
Lele33g1581 581 Pfam BTB/POZ domain 62 183 IPR000210 GO:0005515
Lele33g1581 581 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Lele33g1581 581 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Lele33g1581 581 SUPERFAMILY Ankyrin repeat 256 373 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1581 Lele-ChrLele33 25945915 25951323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele33g1581 NPR1_like_C 3.1e-90 No_clan