Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1573 ATGGTGTCCAGAATGCGCAAGCTTAGAAACTCATTCGCCTCCCTCTTGCCATCTTCCTCCAAATCCGATTCCTCCTCTCGGCTTCCTTCCGACAATGTCACCGATTCCTACAATGACCCGCAACTGCCGCCGCAGCCGCCTTATCGCCGGTCCGTTTCCAACGCCGACATCACCTCCTCCAGCTCCTTGTTTTCTCGATCCTCTTCTTCGATTTCTCGCCTCTCTCGCGTTGTCAGCATGCGATCCACCAAGGAGTTGCATTACCTTGTGCAGAAGACTTGCACCATTTGCTTAGGTGACTTGAAGATAGGGCAAGGCCGGGCCATCTTTGTTGCTGAGTGTGCTCATTCCTTCCATTTCAATTGTATCGCTTCCAATGTCAGGCATGGCAGCCATGTCTGTCCCATCTGTCGTGCCAAATGGAAAGAAATCCCATATCAAGCTCCAATCAATTTCCCTCCTCCTCCTCCTCCCCCCCTCCGGGTCAGGAACAGGCTCAGACCACTGGCTTCTTCACCACCTCGTCGATTAAATCCCTCAGCTATCATCGAGCCTCTCCGCTTCTCTGATGATGAGCCACTCCCTGTTCCAGCAACCTCCGCTGAAGAACATGTTTCATCTGCACCTAATGTTGTGACTGTCAAGTCCTTCGCGGAGTATCCTGTCCTCTCTGCATCTGAAGCTCATCCAGATTTTGCTGTTCTTGCCAACATCGGTGCACCAGCGCTTTCTCAACGTGATCATGCACCTGTGGACCTTGTTACGGTGCTTGACATCAGTGACAGCATGGCTGGTTCAAAGCTGACACTTCTCAAACAGGCTGTTCTTTTTATCATTCAGAATTTGGGTGCTTCTGACAGACTTTCTATAGTTGTTTTCTCCTCCACTGCTCTCAGGATTTTCCCACTTCGTAGGATGACTAATAGTGGCCAATCTGATGCAACCGTTGCCGTCAATTCTCTTTCAACAGATGGCGGAACTGACATTCTGAGTGGCCTCAAAAAAGGAGCTCGTGTACTCGAGGAACGGCGAGAGCGAAACCCGGTTCCCAGCATTATGCTTCTCTCTGATGGCAGGTCTCAACCTTTTATAATTCCTCCATTGGGACCCCAATTGCCTGCTTCCATCACCTCCAATAATCATAGTTCAAATGGGGATTCTATTCCTGTCCACACTTTTGGCTTTGGTAGGGATCATGATTCCACTGCATTGCACGCGATCTCTGATGCATCTGGTGGCACCTTTTCCTTTATTGAATCTGTGGGCATGGTGCAAGATGCTTTTGCAAGGTGCATTGGGGGTCTACTCAGTGTTGTGGCTCAAGAGGTACAACTCATCTTCAAAACAATATCACCAGGCCTGCAAATCAATTCAGTACGCTCAGGGAGATACATCAGTGAAATTAGCGATTCTGGTAGGTTATGTGTCATCAATGTCGGTAACATGTATGCAGAAGAGGAAAAGGGATTTCTGTTGTACCTATCAATTCCTGCAATCCCAGCCATTGAAAGAGACAACAATATGGAGAAACAGACTCCTTTACTGAATGTTAAATGCCGATACAAAGACTCAACCTCTGAGGGAGAGCTAGTTAAGGTTAGCGGTGAGAGAGTAGACATTAGAAGAAGATCAAATGGTTCACCAGAGCCTAATGAAATGACAGTGTCCTTGGAGGTTGACGGACATAAAAATAGACTCATGGTGGCTGATGGGATCGCCGAAGCACGAAGGCTGGCTGAGAGAGGAGACCTGCGAGGCGCGAAAGCTTTGCTGGAAACGAAAAGATCGGTTCTATTGTCCTCAGCCTCAGCATCAGCAGGGGATCTTGCTTGCACTTGGCTTGATGCTGAACTTAGAGAAACTAAGGAGAGAATGGAAAGCAGGGAAAGATACGAACATACAGGAAGGGCTTATGTTCTGTCAGGATTAAGTTCACATTCATGGCAGAGATCTACAACCAGAGGAGACTCTTTAACTCAGTCATTTGTAAGTGGCCATGTCAGAGATCCTTCGGTAAGCGGATCGATCGGGTACGACACGCCTTCAATGGTTAACATGGTGAGAATGTCACAAAATCTTAGTCTGAGTGGATCTTGGCCCCTCCCTGAACCTTGA 2115 0.4818 MVSRMRKLRNSFASLLPSSSKSDSSSRLPSDNVTDSYNDPQLPPQPPYRRSVSNADITSSSSLFSRSSSSISRLSRVVSMRSTKELHYLVQKTCTICLGDLKIGQGRAIFVAECAHSFHFNCIASNVRHGSHVCPICRAKWKEIPYQAPINFPPPPPPPLRVRNRLRPLASSPPRRLNPSAIIEPLRFSDDEPLPVPATSAEEHVSSAPNVVTVKSFAEYPVLSASEAHPDFAVLANIGAPALSQRDHAPVDLVTVLDISDSMAGSKLTLLKQAVLFIIQNLGASDRLSIVVFSSTALRIFPLRRMTNSGQSDATVAVNSLSTDGGTDILSGLKKGARVLEERRERNPVPSIMLLSDGRSQPFIIPPLGPQLPASITSNNHSSNGDSIPVHTFGFGRDHDSTALHAISDASGGTFSFIESVGMVQDAFARCIGGLLSVVAQEVQLIFKTISPGLQINSVRSGRYISEISDSGRLCVINVGNMYAEEEKGFLLYLSIPAIPAIERDNNMEKQTPLLNVKCRYKDSTSEGELVKVSGERVDIRRRSNGSPEPNEMTVSLEVDGHKNRLMVADGIAEARRLAERGDLRGAKALLETKRSVLLSSASASAGDLACTWLDAELRETKERMESRERYEHTGRAYVLSGLSSHSWQRSTTRGDSLTQSFVSGHVRDPSVSGSIGYDTPSMVNMVRMSQNLSLSGSWPLPEP 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1573 704 ProSiteProfiles VWFA domain profile. 252 439 IPR002035 -
Lele33g1573 704 SMART VWA_4 250 430 IPR002035 -
Lele33g1573 704 CDD RING-H2 94 138 - -
Lele33g1573 704 Pfam von Willebrand factor type A domain 252 426 IPR002035 -
Lele33g1573 704 Pfam VWA / Hh protein intein-like 610 691 IPR032838 -
Lele33g1573 704 SUPERFAMILY RING/U-box 83 149 - -
Lele33g1573 704 MobiDBLite consensus disorder prediction 1 52 - -
Lele33g1573 704 ProSiteProfiles Zinc finger RING-type profile. 94 138 IPR001841 -
Lele33g1573 704 Gene3D von Willebrand factor, type A domain 252 433 IPR036465 -
Lele33g1573 704 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 92 692 - -
Lele33g1573 704 SUPERFAMILY vWA-like 248 432 IPR036465 -
Lele33g1573 704 Pfam RING-like zinc finger 94 123 IPR001841 -
Lele33g1573 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 143 IPR013083 -
Lele33g1573 704 SMART ring_2 94 137 IPR001841 -
Lele33g1573 704 MobiDBLite consensus disorder prediction 12 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1573 Lele-ChrLele33 25897499 25900701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1573 94 143 C3H Transcription Factor Family AT1G74410 46.154 7.54e-06 45.8