LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele33g1563	ATGTTCAGTGAAGGACAGTCAGGTGAGAGTGGTTATTCTCCCATTTCTGTTGGAGGCCGTCTATCTCGCATCGTCGAGTTTTCCTTTCTCTCCGAAGCAGAAGAAGATTTCAAGCTCTGTGAGGCCGTTGCAGTGTGCGTTGATTTACTCTACTCTGTTATGGATTTTTGTCTTCTGATTTGGGCTGTCTTGCACGTGAATTTGGAAACTATGACTTCATCTGATCATGAACTCATCGATAACGAAGCTAATGAGCAGCAACAGCAATCAAACTCAGAGATGCAGTCTTCACCTACAAATGGAATTTCTGATTTAGGTATTGCTGCCCAGAATGTCCAGTATGCAGTGCCTCCTCCACAGGTTGGAACTGGACATGCTATGGCACCGGTTTATCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACGCAACCTTATCCCTCACAACCCTATGGAACACAACCAATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTACCCACAGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGTAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTCATCAAGAATCGAAAGCCATACTTGCATGAATCCCGGCATTTGCATGCACTGAGAAGAGCACGAGGATGCGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGATGACCAACAGAATGAGGTGTCATCAACAGATAATTCACTGTCCAATACCAATCTCAATCCTGACCAAAATGATATTGCTTCATCAAATAGGATTTCCTAA	831	0.432	MFSEGQSGESGYSPISVGGRLSRIVEFSFLSEAEEDFKLCEAVAVCVDLLYSVMDFCLLIWAVLHVNLETMTSSDHELIDNEANEQQQQSNSEMQSSPTNGISDLGIAAQNVQYAVPPPQVGTGHAMAPVYPYPDPYYRSIFAPYETQPYPSQPYGTQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIKNRKPYLHESRHLHALRRARGCGGRFLNSKKSDDQQNEVSSTDNSLSNTNLNPDQNDIASSNRIS	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele33g1563	276	ProSitePatterns	NF-YA/HAP2 subunit signature.	185	205	IPR018362	GO:0003677\|GO:0016602
	Lele33g1563	276	MobiDBLite	consensus disorder prediction	82	102	-	-
	Lele33g1563	276	PRINTS	CCAAT-binding transcription factor subunit B signature	214	237	IPR001289	GO:0003700\|GO:0006355
	Lele33g1563	276	PRINTS	CCAAT-binding transcription factor subunit B signature	183	205	IPR001289	GO:0003700\|GO:0006355
	Lele33g1563	276	MobiDBLite	consensus disorder prediction	235	276	-	-
	Lele33g1563	276	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	80	266	IPR001289	GO:0003700\|GO:0006355
	Lele33g1563	276	Gene3D	-	180	241	-	-
	Lele33g1563	276	MobiDBLite	consensus disorder prediction	240	276	-	-
	Lele33g1563	276	SMART	cbf3	179	240	IPR001289	GO:0003700\|GO:0006355
	Lele33g1563	276	MobiDBLite	consensus disorder prediction	83	102	-	-
	Lele33g1563	276	ProSiteProfiles	NF-YA/HAP2 family profile.	180	240	IPR001289	GO:0003700\|GO:0006355
	Lele33g1563	276	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	182	237	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele33g1563	Lele-ChrLele33	25814501	25818561	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele33g1563	71	276	CCAAT-HAP2 Transcription Factor Family	AT1G30500	57.692	1.28e-69	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Lele33g1563		CBFB_NFYA	6.7e-26	No_clan