Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1560 ATGAATAACCGTGGGGGAGTTGGGAGGGCTGCCTCGGATGTTATACCATTTTGTGGTATAAACTTGGAATCGAGTTTCTGTTATGGTTTGTGTTTAAAAAGTTTTTTCACCTTGTCCTTGAGGGGAAGCTTGAGGCTGGAAGAAGCTGCCTTTTTTGTCTGGTTTCTTCACTTGTGGATTTCTGAGCTTGTTTTATCCTCTACATGCATGCATTTTACAGGTAAAAGAAGACTGAAGGACCTATTGCTTCAAAAAGACAATCGTTTTTGTGCTGATTGCAATGCTTCAGATCCCATGTGGGCGTCAGCTAATATTGGAGTTTTTATCTGCTTAAAATGTTGCGGTGTACACAGAAGCCTCGGTACTCATATATCAAAGGTTTTGTCCGTGACATTGGATGAATGGTCAGATGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATGCTTCTGCTAATAAAATTTATGAGGCTCATATTCCGGAAGGATATAGTAAGCCCACACCAGATGCCAGTCATGAACAGCGCACAAATTTCATCCGATCCAAGTATGAGCTTCAAGACTTTTTGAAACCTGGTTTGCGCATTGCATCTGGAAAAAGCGCTCAAGAGTCAAATTCTTCCAACAAACTTACGGATACTTCCCGAACCACTAGTGGTCCCCAGAAAACGGAAGCAATGGTTGAATTTATCGGGTTGCTGAAGGTGACAGTGGTTAAAGGCACAAATTTAGCTATTCGAGATATGAGGTCTAGTGATCCATATGTCATCTTAAATCTGGGCCAACAGACAGTTCAGTCAAGTGTAGTGAACAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTATCTGTTCCCCAGGAATATGGAACATTGAAATTGCAAGTATATGATCATGATACATTCTCGGCGGATGATATAATGGGAGAGGCAGAAATTGATCTGCAACCCATGATAACGTCAGCAATGGCATTTGGAAATGCAGAAATGTTCGGCAATATGCAGATCGGGAAGTGGCTTAAATCTGATGACAATGCTCTCATAGAGGATAGCTTAGTCCATATAGTTGATGGAAAGATTTTACAAAAAATGACTCTCAAGCTGCAGAATGTTGAATCTGGAGAATTAGATCTAGAACTTGAATGGTTGCCTCTTGATCAATAG 1167 0.407 MNNRGGVGRAASDVIPFCGINLESSFCYGLCLKSFFTLSLRGSLRLEEAAFFVWFLHLWISELVLSSTCMHFTGKRRLKDLLLQKDNRFCADCNASDPMWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNASANKIYEAHIPEGYSKPTPDASHEQRTNFIRSKYELQDFLKPGLRIASGKSAQESNSSNKLTDTSRTTSGPQKTEAMVEFIGLLKVTVVKGTNLAIRDMRSSDPYVILNLGQQTVQSSVVNSNLNPVWNEELMLSVPQEYGTLKLQVYDHDTFSADDIMGEAEIDLQPMITSAMAFGNAEMFGNMQIGKWLKSDDNALIEDSLVHIVDGKILQKMTLKLQNVESGELDLELEWLPLDQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1560 388 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 228 317 IPR035892 -
Lele33g1560 388 SMART arf_gap_3 75 197 IPR001164 GO:0005096
Lele33g1560 388 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 74 388 IPR044518 GO:0005096|GO:0005543
Lele33g1560 388 SUPERFAMILY ArfGap/RecO-like zinc finger 75 191 IPR037278 -
Lele33g1560 388 Pfam C2 domain 232 322 IPR000008 -
Lele33g1560 388 Pfam Putative GTPase activating protein for Arf 76 191 IPR001164 GO:0005096
Lele33g1560 388 FunFam Arf-GAP with dual PH domain-containing protein 1 70 198 - -
Lele33g1560 388 SMART C2_3c 233 328 IPR000008 -
Lele33g1560 388 MobiDBLite consensus disorder prediction 199 222 - -
Lele33g1560 388 Gene3D C2 domain 230 388 IPR035892 -
Lele33g1560 388 ProSiteProfiles ARF GTPase-activating proteins domain profile. 75 189 IPR001164 GO:0005096
Lele33g1560 388 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 230 388 - -
Lele33g1560 388 CDD C2_ArfGAP 231 375 - -
Lele33g1560 388 Gene3D Arf GTPase activating protein 66 194 IPR038508 -
Lele33g1560 388 ProSiteProfiles C2 domain profile. 215 329 IPR000008 -
Lele33g1560 388 PRINTS HIV Rev interacting protein signature 106 123 IPR001164 GO:0005096
Lele33g1560 388 PRINTS HIV Rev interacting protein signature 87 106 IPR001164 GO:0005096
Lele33g1560 388 PRINTS HIV Rev interacting protein signature 127 148 IPR001164 GO:0005096
Lele33g1560 388 CDD ArfGap 78 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1560 Lele-ChrLele33 25800150 25803881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1560 73 388 C2H2 Transcription Factor Family AT4G21160 73.538 7.23e-179 499