Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1550 ATGGAAAAACAGAATAAAGTGAATAATGCAGTAAAGAAGCCAGAAGAATACTGCCCTATAGATGAAAAAGATGATGAGGATGAGGATAACAAGGAAAATGAGTATGGTAGCGATGAAGGAGAAGGTGAAGATGCTGAGGTTGGAAATGATCTTCAAGATAAGGCAGGGTACTTGTTAGGAGAGGAAGGCCCAACTTCTACAGAGGAGGAACTTGAAAGAGGTATTCAAGCAGAAAATGCGGATGAGGATAATGAGCCTGCTAGACATTTCAGCCATGGATCTTACCTGGTTCAAGGAAAGCTAGACCATGGAATGGAGGATTATATTTTTGCTGAACACAGGAACGTCAATGGCTACGACTTAGGACTATATGCAATCTTTGATGGCCACGCTGGTCGTGCTGTCGCAAAATACTTGCATGGCCATCTATGTGACAGAATATTGAATGAGCCTGACTTGTGGAAAAATCCAGTACGTGTCCTGAAGAGATCATGCATGGCTATAGATGAGGAGATCCTAGAAAAGGTGGCAGATTCACGAGGAGGATCGACGGCTGTTGTAGGAATACTTGTCAATGGAGTGAAGTTACTGGTGGCCAACGTTGGCGATTCTCGAGCAATATTATACAGAAAAGGGGTGGCGAAACCAATAACAGTAGATCATGAGCCACAGAGAGAGAGAGATCTTGTTGAGAGCAAAGGAGGTTTTGTGTCTAAGGCACCTGGGTGTGTTCCGAGAGTGGACGGTGTATTAGCAATGAGCAGGGCATTTGGGGATGGGAGATTGAAGCAACACATCACTGCAGAACCAGATGTGATGGTTCAAAACATTGCTGACGACACTGAGTTCATCATTTTGGCTAGTGATGGCCTCTGGAAGGTGATGACGAACGAAGAGGCTTGTGAGTGCGTGAAGGACATGGATGATGCCAGAAAAGCAGCTAAGAAGTTGGTTAAACAAGCATTAGCTCAAGGGAGCTACGATGATATTTCATGCATTGTTATTGGAGCGCATGGTCTACGAGCTCGACGACCTAGAAAACGTGGCCTCTTCAGCCGCCGCGAAATAGCCGAGATCGTGAAGCAACGTTGGAAATTCGAGTACAGACTCAAGCGCCCGAGCCCCCTCAAGAAGGACTATTTAGCCTATATTGAATACGAGACTCAGCTTGACGCCCTCCGGAGGCTTCGCAAGAAGCTGGTGGTGTCGCACGAGTCGAAGAATCAAGGAAACGATAATAATACTAATAAGAAGAAGTCCAAGTCAGATTTAGCTGGTGTGTTGAGGATTATGGAGATTTATGAGTTGGGTTTGGAGCGGTATAAAGGTGATATTGATCTTTGGTTTCGATATCTTGAGTTTTGCAGAATGAAGAAAAATGGGAGGATGAAGAAGGTTTCATCCAAAGATACCTGGAGTTTGGATATATGCTGCAGCCGTAACTTAAATGTTGCAGCTGCCCGTGTTCTAATGCAAGGACTTAGGGTTTGCTCAACTTCGGAAGACCTTTGGGTAGAGTATCTTCGGATGGAACTTACATATCTTAACAAGTTAAAGGCTAGAAAGGTTGCTCTCGGTGAGGATGTGGGTACGTTGACTCGCGATCAGAGCGATTCTAATGAGAAACAACAGAGAGATGAAAATGAGGATTCATTCATGTCCTTAAATTTTAAAACAGAAAATAATGAGAATTCAAATGCTGAAAATGCCGATTCAGAAAAGAAACAAGCAATGTTTGCTGAGCATGGTATGAGCATCTTCCAAACTATCTACAGTGGGGCAGTTGAAGATGTCCCCGCAAGTCTTAATCTTCGGCAGCGATTTCTTGAAATATTGGAGGGTACTAAGTTAGCTAATTCTGAAGAAATGTGTAAGGAGATACTGATTGACATGAAGAGAGATTTTTTGACAGAGCCAGAGTTCTGGTATTGGCTTGCGAGACGTGAATATAACCCTCAAAATTTGCAGGAGATGAGTGAAGAAGCCATCATTCCCCATATGCAAAAGGCAATTCCTGTTTATGAGGAGGCTTTGGAAAGTGTGCCCTCCGGCAATGTCTTTAGGTTGTATGCGAACTGTCTAATGGGTTTTATAGCTCATAAAGGGGGAGAAACCAATATATCTGGGTGGTCAGATGAAGCTGTAAATTATATATCGCGTCTGTTGCGAATATATGAAAGGGCTGAAAGTATGGAGTGCCTTACTGAAGATCTTGCGTGTGATTATTTGTCATTTTATTTGCAATTGGGACAGTTGGATGAAGCCAGGAAGCTGGCGACAAAGCTTTGCCCTGGCAAACTTGCAGAGTCTGTGCAATTATGGGTTTTAAGGATAACTGCAGAGATTAAATGCATAACAAGGAGTTCTCCTTCACTTAGTGATGCTGATGTGTTATCCCTCTTTGAACTCCTAAGATGCAGTTTGAGAAAATTTCCCGTTTCAAAATCTGAGAACTTGTGGGTAATGGCCCTTAAATTCTATGCAAATCAAAAAACGTATTTTGATAAGCTGTTGGAGATTTCTGTCTCTACTTTGGCCAGGGACGGCGGCAGTGAAAATGGATTTTCCCTCTCCTCTGCCATTGTAAAGTTTATCCTTCTAAAGGATGGAATTCAGCAGGCCAGAGAGATATATAAGCGATTTCTAGCTTTACCACATCCTGGCCTTGATTTATATAAAAACTGCATTGACCTTGAAACAAACCTTGCTTCACTTGGAGATCAAGATGGTCTCGTGAATGCTAGAAAATTATACGAATCTGAACTTGCAACTTATGACCAAGATGTCAAATTGTGGGAAGATTACTATCAAATGGAAAGCAAGATGGGAATATCTGAAAAGTCTACTGCCGTTATGTGGCGGGCAAGGAGGATACTCAAAGATGCGGGCCTATCCCTTGCTTCCCCCAATTTGAGATGA 2919 0.4289 MEKQNKVNNAVKKPEEYCPIDEKDDEDEDNKENEYGSDEGEGEDAEVGNDLQDKAGYLLGEEGPTSTEEELERGIQAENADEDNEPARHFSHGSYLVQGKLDHGMEDYIFAEHRNVNGYDLGLYAIFDGHAGRAVAKYLHGHLCDRILNEPDLWKNPVRVLKRSCMAIDEEILEKVADSRGGSTAVVGILVNGVKLLVANVGDSRAILYRKGVAKPITVDHEPQRERDLVESKGGFVSKAPGCVPRVDGVLAMSRAFGDGRLKQHITAEPDVMVQNIADDTEFIILASDGLWKVMTNEEACECVKDMDDARKAAKKLVKQALAQGSYDDISCIVIGAHGLRARRPRKRGLFSRREIAEIVKQRWKFEYRLKRPSPLKKDYLAYIEYETQLDALRRLRKKLVVSHESKNQGNDNNTNKKKSKSDLAGVLRIMEIYELGLERYKGDIDLWFRYLEFCRMKKNGRMKKVSSKDTWSLDICCSRNLNVAAARVLMQGLRVCSTSEDLWVEYLRMELTYLNKLKARKVALGEDVGTLTRDQSDSNEKQQRDENEDSFMSLNFKTENNENSNAENADSEKKQAMFAEHGMSIFQTIYSGAVEDVPASLNLRQRFLEILEGTKLANSEEMCKEILIDMKRDFLTEPEFWYWLARREYNPQNLQEMSEEAIIPHMQKAIPVYEEALESVPSGNVFRLYANCLMGFIAHKGGETNISGWSDEAVNYISRLLRIYERAESMECLTEDLACDYLSFYLQLGQLDEARKLATKLCPGKLAESVQLWVLRITAEIKCITRSSPSLSDADVLSLFELLRCSLRKFPVSKSENLWVMALKFYANQKTYFDKLLEISVSTLARDGGSENGFSLSSAIVKFILLKDGIQQAREIYKRFLALPHPGLDLYKNCIDLETNLASLGDQDGLVNARKLYESELATYDQDVKLWEDYYQMESKMGISEKSTAVMWRARRILKDAGLSLASPNLR 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1550 972 Pfam U3 small nucleolar RNA-associated protein 6 346 413 IPR013949 GO:0000462|GO:0030515
Lele33g1550 972 MobiDBLite consensus disorder prediction 1 72 - -
Lele33g1550 972 MobiDBLite consensus disorder prediction 20 46 - -
Lele33g1550 972 SUPERFAMILY TPR-like 437 830 IPR011990 GO:0005515
Lele33g1550 972 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 480 960 IPR013949 GO:0000462|GO:0030515
Lele33g1550 972 Gene3D Tetratricopeptide repeat domain 798 965 IPR011990 GO:0005515
Lele33g1550 972 Gene3D Tetratricopeptide repeat domain 552 790 IPR011990 GO:0005515
Lele33g1550 972 ProSiteProfiles PPM-type phosphatase domain profile. 91 337 IPR001932 -
Lele33g1550 972 SUPERFAMILY TPR-like 815 959 IPR011990 GO:0005515
Lele33g1550 972 CDD PP2Cc 90 335 IPR001932 -
Lele33g1550 972 Pfam Protein phosphatase 2C 103 330 IPR001932 -
Lele33g1550 972 SUPERFAMILY PP2C-like 88 336 IPR036457 -
Lele33g1550 972 Coils Coil 555 575 - -
Lele33g1550 972 MobiDBLite consensus disorder prediction 1 19 - -
Lele33g1550 972 SMART PP2C_4 84 335 IPR001932 -
Lele33g1550 972 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Lele33g1550 972 Gene3D - 72 340 IPR036457 -
Lele33g1550 972 SMART hat_new_1 909 941 IPR003107 GO:0006396
Lele33g1550 972 SMART hat_new_1 665 696 IPR003107 GO:0006396
Lele33g1550 972 SMART hat_new_1 425 457 IPR003107 GO:0006396
Lele33g1550 972 SMART hat_new_1 481 513 IPR003107 GO:0006396
Lele33g1550 972 SMART hat_new_1 869 901 IPR003107 GO:0006396
Lele33g1550 972 FunFam Probable protein phosphatase 2C 39 83 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1550 Lele-ChrLele33 25736696 25742954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1550 66 335 PP2C-type Phosphatase Gene Family AT3G15260 50.365 2.76e-87 280