Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1421 ATGTCTGAAAGACGGGTTTCTGATCCTAGCAAGCTTCATCTCAAGAATAAGGACCTCACTCAAATTCGTAAAGCTGCTCGCGTGTTGAGGGATCCTGGTACGACGTCGTCCTGGAAGTCACCTCTTAGTTCCTCGAGGTCCGTTACTGCTCCTTCTGCTTCTGCTTCTGCATGGAAGAGCAATTTCTACAGAGGAAAAGAGAATAGCGTGTCCTTGTGCAACTGGGAGAATCACAAATCATCAGGCGACAAGGGTGGGGTGGCAGAGAACGACGACGTAGAGGAAGAAGATGATGTTGATGATGAGGGTGCTGCTGTTGGTGGCGGCAACGACGGGTCTTCTTCATCTCTTCTGGGAAGTTTCGAGGATTCCTTGAGCTATGCTCGAGGTTGCGATTCGAAGAGCGACACTTACTTGCGGGATGAGAGACCTTCTTCTATCTTCCGGTGTAGAGACGCCAATCATCTTTGTTCAGCCAGAAGAAAAATGAGCAGTATCAAGAGAAAGAGTAAGAAAACTAAGACATATTTGGATAACTTATCAAAATATCGGCAACCAGAAACAAATTTGGGTAGGAAGTTTGTAAATTCCAAGACATTTCTAGAAGACTCAATTGAACAGTCTGATGATACTGAAGACTACTGCAATTCTGAGGATTTAAGGCGAATTTTAGGTTCATCTCGTTTGCTGTTGAAACTCAAGCGTAAGAATTGGTCTCGTTCTTCCTCAAAGTTACTGAGAAGTAGCCGAACTGAGGACTCTTCTTATACTTATAGTACTCCTGCGTTATCAACCTGCTCTTATAATAGGTATGGTCACTATAATTCAAGTACTGTTGGATCCTGGGATGCCACGGCAAGCTCATTGAATGATGGTGATGATGAGGTAGACGATCATTTGGATTTGCCTGGCCAGAGGGGATGCGGGATTCCTTGCTATTGGTCCAAGAGGACTCCAAAAAATAGAGGTATGTGTAGGACTTGCTGTTCTCCTTCTCTTTCAGAGACTTTGAGGAGGAAAGGAAGTAGCTTATTCTGTGGAAGTCAAAGTATCTATACAAGACACCGAAGGTCCTTATCAAGCTCTAACAAGTGGAGAGTTTCTTCAAGGAGCACTCAGGGTGTTCTTCCGCTGCTCACCAGCAGTGGTGATGTTAAAGGAGGGTCATCTGTAGGAACTGGAAGGAGCGATGATGAACTTTCCTCAAACTTAAGGGAACTTTATCTTGAGGGTTTAAGCAGGTTAGATGGAAGGAGATGGTCATCAAGTTGTAGGAGTCAAGATGGTTTGGAGATGGTGGCTGTAGATGGGGAAGGGGATGAGGAAGGCACACTAGAAAATGCTACGAGTTTTAGTCAGAAGTATAAGCCTATTTCCTTTGGTGACTTGATTGGCCAGAATATTGTGGTTCAGTCACTTATGAATGCTATTTCAAGGGATAGAATTGCTCCCATTTATTTTTTCCAAGGTCCTCGTGGTACTGGTAAAACTTCAACAGCCAGAATTTTTGCTGCTGCCCTTAATTGTACAGCTCCTGATGTAAGTAAGCCTTGTGGATACTGCAGGAATTGCACTGATATCAATTCTGGAAAGAGTAGGGATTTCTTGGAAGTTGATGGAACCAATAAGCAAGGAATTGATAGTGTTAGATATCTATTGAAAAGACTATCAGTAGGGTCACCATCAGCCTCCTCATGGTACACTGTGTTTGTGATAGATGAGTGTCACTTGCTTCCTTCTAAGACATGGCTGGCATTTCTGAAGTTTTTGGAAGAACCAACAAGTCGAGTTGTGTTTATATTTATAACAACTGATCTTGAAATTGTACCGCGGACAATACAGTCTCTATGCCAGAAGTACCTTTTTAAGAAAATTAAAGATGGTGATATTGTGGCCAAACTGAAGACACTATCTGCTGAGGAGAACCTGGATGTTGAAAAAGATGCGCTGGACCTTATTGCTATGAATGCAGACGGTTCGCTTGAAGATGCAGAAACTATGTTAGAACAACTGAGTTTGCTGGGGAAAAGAATTACTACTTCACTTGTCAATGAACTTGTGGGTGTTGTCTCAGATGAAAAACTACTAGAGCTGTTGGAGTTAGCAATGTCATCAGATACCTCAGAAACAGTGAAGAGAGCCAGAGAAATGATGAATTCTGTGGCTGATCCAATGATTTTGATATCACAAATGGCATTCCTCATTATGGACATCATTGCTGGATCATATACTGTCATTGATGCCAAACCTAGTGATTCGTATTTTGGCGGACGAAGTCTGAATGAATTGGAGTTGGGGAGGCTAAAGCATGCTTTGAAGCTGCTCTCAGAGGCTGAGAAACGTTTGAGGACTTCTAGTGAACGCTCAACGTGGTTTACAGCTACTCTATTACAGCTTGGTTCAATGCCTTCACCAGATCTTACCCTGTCAGGCAGCGGCAGGAGACAGAGCTGCAAGGCTTCCGAATATGATCCATCAAGTTCTTCAAGAGAAGTTACTGCTCCAAAGCATAGTTCGGATGTCAGATATACTTCTCGAATGTCAACACCCTCCACATCCCAGCTATGGCCTTTGAATGGCAATTGTAGACATCAAAGGGATGTATCATGTAAGTCGGATGGTTTCAGCTCAAGTTCAAAGCCATCAAGTAGTCCATTTCTAGGAGATGATGATGCAACACCTGCTTCATCTGATGATCTTATTACTGGGAATACGATGTCAAGATGTGTAAATTCAGGCAAGTTACATAATATCTGGGCAAGTTGTATATGCAGGTGTCACTCTAAGACATTGAGGCAGCTGCTCCACAATCATGGAAAACTTGTATCTATTTGTGAAGTTGAAGGTGTTCTGGTTGCATATGTTGCATTTGGAGATAAAGATATTAAAATTAGGGCTGACAGGTTTTTGAGTAGTATTACAAATTCAATGGAAATGGTACTAAGTTGCAATGTGGAGGTTATAATTATTCACTTGCCAGAGGGTGAAGGTGAAAATCTACCTGGTATCATGCAGGCAGGATCAGCAATGGGAAGTGAGAGGCATAAAAAAGGAGACCATGCAAATGGAAAGGGTAGTAATTCTAGTTTTCCTCCTTTGCTGGATGAAAACTTGCAGCCCATCATTGATTCATCAGATTTTACGGCTGGGAGAAACGGTGTGAGAGAGGATGAACAGGAAATTCCCACACAAAGAGTTGAATCTATTATACATGAGCAGAGGCTGGAAACTGCCTGGCTACAGGCTGTAGAAAAAGGTTCTCCGGGATCCTTGAATCATGCAAGACCTGAGAAAAATCAGGTCCTGCCTCGGGAAACTGTTATCTGTAATGACCCAGTAGAGTCCATTGATTCAACAAGATTTTCCTTTCGGCATTGGGAAGATGACCCTCGTCATGAAGTCAAAGTTTTGAAAGTTAAACATGGAAGAATCATACAAAATGGTCAGATTAGTAGAAATGGAGTTCGATGTCCCATGTCCCCAAGTTTATTGCATGGTAGCAGTTTAGCATCAAATTCCAACAAAGATAATCTGGGATATGAGTCAGGCTCCGGAGCTGGAGGTTGCATAGGACTTTTATGTTGGAATAACTGCAAGCGAAGAAGCAGGGTAAAGGTAGCTTCTTGA 3627 0.4262 MSERRVSDPSKLHLKNKDLTQIRKAARVLRDPGTTSSWKSPLSSSRSVTAPSASASAWKSNFYRGKENSVSLCNWENHKSSGDKGGVAENDDVEEEDDVDDEGAAVGGGNDGSSSSLLGSFEDSLSYARGCDSKSDTYLRDERPSSIFRCRDANHLCSARRKMSSIKRKSKKTKTYLDNLSKYRQPETNLGRKFVNSKTFLEDSIEQSDDTEDYCNSEDLRRILGSSRLLLKLKRKNWSRSSSKLLRSSRTEDSSYTYSTPALSTCSYNRYGHYNSSTVGSWDATASSLNDGDDEVDDHLDLPGQRGCGIPCYWSKRTPKNRGMCRTCCSPSLSETLRRKGSSLFCGSQSIYTRHRRSLSSSNKWRVSSRSTQGVLPLLTSSGDVKGGSSVGTGRSDDELSSNLRELYLEGLSRLDGRRWSSSCRSQDGLEMVAVDGEGDEEGTLENATSFSQKYKPISFGDLIGQNIVVQSLMNAISRDRIAPIYFFQGPRGTGKTSTARIFAAALNCTAPDVSKPCGYCRNCTDINSGKSRDFLEVDGTNKQGIDSVRYLLKRLSVGSPSASSWYTVFVIDECHLLPSKTWLAFLKFLEEPTSRVVFIFITTDLEIVPRTIQSLCQKYLFKKIKDGDIVAKLKTLSAEENLDVEKDALDLIAMNADGSLEDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTSETVKRAREMMNSVADPMILISQMAFLIMDIIAGSYTVIDAKPSDSYFGGRSLNELELGRLKHALKLLSEAEKRLRTSSERSTWFTATLLQLGSMPSPDLTLSGSGRRQSCKASEYDPSSSSREVTAPKHSSDVRYTSRMSTPSTSQLWPLNGNCRHQRDVSCKSDGFSSSSKPSSSPFLGDDDATPASSDDLITGNTMSRCVNSGKLHNIWASCICRCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFGDKDIKIRADRFLSSITNSMEMVLSCNVEVIIIHLPEGEGENLPGIMQAGSAMGSERHKKGDHANGKGSNSSFPPLLDENLQPIIDSSDFTAGRNGVREDEQEIPTQRVESIIHEQRLETAWLQAVEKGSPGSLNHARPEKNQVLPRETVICNDPVESIDSTRFSFRHWEDDPRHEVKVLKVKHGRIIQNGQISRNGVRCPMSPSLLHGSSLASNSNKDNLGYESGSGAGGCIGLLCWNNCKRRSRVKVAS 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1421 1208 FunFam DNA polymerase III subunit gamma/tau 626 688 - -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 872 890 - -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 26 56 - -
Lele33g1421 1208 Pfam DNA polymerase III, delta subunit 465 625 - -
Lele33g1421 1208 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 450 799 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lele33g1421 1208 MobiDBLite consensus disorder prediction 1008 1030 - -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 803 860 - -
Lele33g1421 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 675 IPR027417 -
Lele33g1421 1208 CDD HLD_clamp_pol_III_gamma_tau 625 688 IPR045085 -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 33 56 - -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 378 398 - -
Lele33g1421 1208 Gene3D - 627 688 - -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 872 899 - -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 89 104 - -
Lele33g1421 1208 SMART AAA_5 482 636 IPR003593 -
Lele33g1421 1208 Coils Coil 768 788 - -
Lele33g1421 1208 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 453 833 - -
Lele33g1421 1208 Gene3D - 442 624 IPR027417 -
Lele33g1421 1208 MobiDBLite consensus disorder prediction 77 117 - -
Lele33g1421 1208 CDD AAA 464 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1421 Lele-ChrLele33 24721453 24726481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1421 444 740 Core DNA Replication Machinery Family AT1G21690 25.649 7.55e-12 66.2