Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1415 ATGGAACTTTCTAGTCAAGAAGCAGAAATCCCAATGCCAATAAACAGTACTGCATGTGGTGGGGAACATGGTAATGGCCATGGGCCTGAGGGCCATGGGAACATGACCCATCATCATCATCATCATCATCTCCACCACCACCAAGACCCTTCTAATGGCTCCTCCATTACACAACAACCGGCCCTTCAAGATCATCCTCGGGAACATGGACCCTACATGATGAAGAAGAAAGAGGTAAGGTACAGAGAGTGCCTTAAGAATCATGCAGCTTCCATGGGAGGTACTGCCCTTGATGGCTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACCATAGAAGCCTTAACCTGCTCAGCTTGCCACTGTCATAGGAATTTCCACAGAAAAGAAGTGGAAGGTGAGCCTTCTTATTACCAATTTGGAAGCAAATTCTTCTTGGGACATCATCATCACAAGAGTGTCCTAGCTTCCCCAGAAGCTCTTGTGGGGTACCCGACAGGCAACATTCTTCCTCCAAGAAGTGTACCACCGCACCAGATGATACTGCCCTACAATGTAGGGCCTGGGCCAGTTCCTTCAGAATCAGATGAGCAAGAAGATGGTGGCGGTGGTGGTGGTGGATTAATGCCGAGTAGGCCAGCATCATCATCACAGATAGTGAAGAAGAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGAATTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAGGAAGAATCTGTTGTGCAACAGTTCTGTCAAGAGATTGGAGTCAGAAGAAGAGTGCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCAAAAAGATTGATAATAATCCCCCACCACCACCATCAACTACCACAACTGCTTAG 897 0.4738 MELSSQEAEIPMPINSTACGGEHGNGHGPEGHGNMTHHHHHHHLHHHQDPSNGSSITQQPALQDHPREHGPYMMKKKEVRYRECLKNHAASMGGTALDGCGEFMPSGEEGTIEALTCSACHCHRNFHRKEVEGEPSYYQFGSKFFLGHHHHKSVLASPEALVGYPTGNILPPRSVPPHQMILPYNVGPGPVPSESDEQEDGGGGGGGLMPSRPASSSQIVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVRRRVLKVWMHNNKHNLAKKIDNNPPPPPSTTTTA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1415 298 Pfam ZF-HD protein dimerisation region 79 131 IPR006456 -
Lele33g1415 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 80 131 IPR006456 -
Lele33g1415 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 280 - -
Lele33g1415 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 221 277 IPR006455 -
Lele33g1415 298 FunFam Zinc-finger homeodomain protein 2 209 282 - -
Lele33g1415 298 MobiDBLite consensus disorder prediction 186 219 - -
Lele33g1415 298 MobiDBLite consensus disorder prediction 1 69 - -
Lele33g1415 298 Gene3D - 210 282 - -
Lele33g1415 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 130 IPR006456 -
Lele33g1415 298 SUPERFAMILY Homeodomain-like 214 282 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1415 Lele-ChrLele33 24682571 24683467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1415 79 286 ZF-HD Transcription Factor Family AT2G02540 54.911 1.54e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele33g1415 ZF-HD_dimer 1.8e-29 No_clan