Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1409 ATGGCATTTATGGCTTCAAATCAGACCCCTGGTGGAAACGAAGCAGCAGGGCCGACTAATGATGCCTTGTCCAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTTGCTCTTCCCATTGAAGGAGAGCGAGTTTATTACTTTCCCCAGGGGCATATGGAACAGCTTGAGGCATCTATGCACCAAGGAGCAGAGCAACAAATGCCTTCCTTCAACCTGCCATCTAAAATTTTATGCAAAGTGGTCAATGTTCTTCTTCGGGCTGAACCTGAGACAGATGAAGTATATGCACAGATAACTTTGCTTCCAGAACCAGATCAAAGCGAGTTGAGTAGTCCAGATGATCCTCTGCCAGAACCTGCAAGATGCACTGTCCATTCATTTTGTAAAACACTCACCGCATCTGACACCAGTACCCATGGTGGATTTTCTGTTCTTCGGAGACATGCAGATGAATGTTTACCACCCTTGGACATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTAGACATATTTTCCGAGGGCAACCTAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAGAAATTAGTGGCTGGTGACGCGTTTATATTCCTGAGAGGTGAAAACGGGAAGCTACGTGTTGGAGTTAGGAGGCTGATGAGACAGCAAAATAACATGCCATCATCTGTTATATCAAGTCACAGTATGCATCTGGGGGTTTTGGCTACTGCGTCTCATGCAATTGCCACTGGAACTCTGTTTTCTGTATTTTACAAGCCCAGAACAAGTCGATCAGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTAAGAGTCACAAGTTTTCCATTGGGATGAGATTCAAGATGAGGTTTGAAGGCGATGAAGTTCCTGAGAGAAGGTTTAGTGGTACAATTGTTGGGGTTGGAGATAATATCTCACCTGTCTGGGCTGATTCTGAGTGGCGCTCATTAAAGGTTCAATGGGATGAACATTCTTCAATCTTGCGACCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGAATACCACCACTCCTGCTAATTCCCAACCAGCCCAAAGAAACAAGAGGTCGCGTCCTCCCCTGCTGCCATCAGCAGTGCCTGATTCTTTGCATGGTGTCTGGAAATCAGTTAATAAATCTCCAGCGTTCTCTTATGGTGATCTCCAACATGGACGAGACCTCTATTCAGCATCCAAGGTCAATCCTACTGGTACTAACTTTCTTGGTATTGGCGGGAATAGTCCTATGGGGGCTGTTTCTAGTAAGGCAACTTATTGGTCCAATAGGGTGGAGAACTCTTTGGAGTCTATGGCCCCTAAAGAATCCCTTGAAAAGAGACAAGGCACTGGAAATGGCTGCAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTACCAGCAACATTGTCAGGAAGGGTAGGAGATGATAGGTCTGCTCGATATGTTGATGTTGAGTCTGATCGGCAGTCTGAACCATCAAATGTTAACCGTGCTGATGTTCCTTGTGATGCTGAAAAATCGTGCTTGCAGTCTCCCCCTGAAGCATTAAGCAAGCAAATAAGGAGCTGCACGAAGGTTCACATGCACGGGATGGCTGTTGGAAGGGCTGTGGACTTGACTCGGTTTGATGGATATGAAGATCTGCTCAAAAAATTGGAGGAGATGTTTGACATCAAGGGCGAGCTCTGTGGATCCAATAAAACTTGGCAAGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTCGGAGATATTCCATGGAATGAGTTCTGTAGTGCCGTGAGGAAAATTTTCATTTACACTGCAGAGGAGGTGAAGAAGCTTTTGCCTAAAGCGCTACTTTCGGTTGGTGAAGAAGCTAAAACAAGTAAGCTAGATTCTGAAGCAGCAGTTAATGCGGAGGACCAGGATCAGTCATCTATTGTGGGGCCTAGTTTTTAA 2022 0.454 MAFMASNQTPGGNEAAGPTNDALSKELWHACAGPLVALPIEGERVYYFPQGHMEQLEASMHQGAEQQMPSFNLPSKILCKVVNVLLRAEPETDEVYAQITLLPEPDQSELSSPDDPLPEPARCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGKLRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKFSIGMRFKMRFEGDEVPERRFSGTIVGVGDNISPVWADSEWRSLKVQWDEHSSILRPDRVSPWELEPLVNTTTPANSQPAQRNKRSRPPLLPSAVPDSLHGVWKSVNKSPAFSYGDLQHGRDLYSASKVNPTGTNFLGIGGNSPMGAVSSKATYWSNRVENSLESMAPKESLEKRQGTGNGCRLFGIQLLENSNVEESMLPATLSGRVGDDRSARYVDVESDRQSEPSNVNRADVPCDAEKSCLQSPPEALSKQIRSCTKVHMHGMAVGRAVDLTRFDGYEDLLKKLEEMFDIKGELCGSNKTWQVVYTDNEDDVMMVGDIPWNEFCSAVRKIFIYTAEEVKKLLPKALLSVGEEAKTSKLDSEAAVNAEDQDQSSIVGPSF 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1409 673 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Lele33g1409 673 SUPERFAMILY CAD & PB1 domains 549 624 - -
Lele33g1409 673 ProSiteProfiles PB1 domain profile. 547 640 IPR000270 GO:0005515
Lele33g1409 673 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele33g1409 673 Gene3D - 291 364 - -
Lele33g1409 673 CDD B3_DNA 126 228 IPR003340 GO:0003677
Lele33g1409 673 FunFam Auxin response factor 542 636 - -
Lele33g1409 673 MobiDBLite consensus disorder prediction 360 375 - -
Lele33g1409 673 MobiDBLite consensus disorder prediction 649 673 - -
Lele33g1409 673 MobiDBLite consensus disorder prediction 1 20 - -
Lele33g1409 673 MobiDBLite consensus disorder prediction 1 15 - -
Lele33g1409 673 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Lele33g1409 673 SMART B3_2 128 230 IPR003340 GO:0003677
Lele33g1409 673 Pfam AUX/IAA family 545 637 IPR033389 -
Lele33g1409 673 Gene3D - 542 636 - -
Lele33g1409 673 MobiDBLite consensus disorder prediction 360 384 - -
Lele33g1409 673 FunFam Auxin response factor 291 363 - -
Lele33g1409 673 Gene3D - 125 230 IPR015300 -
Lele33g1409 673 MobiDBLite consensus disorder prediction 659 673 - -
Lele33g1409 673 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lele33g1409 673 FunFam Auxin response factor 126 230 - -
Lele33g1409 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 635 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1409 Lele-ChrLele33 24617492 24624511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1409 5 670 B3 DNA Binding Superfamily AT1G59750 68.351 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele33g1409 AUX_IAA 1.4e-13 CL0072