Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1404 ATGGATGATAGGGGGTCGAGGATTAGGATACAGGAGAATATGGAGGAGAGGGAATCAGGAAATGATGAGAAAGGGACGCTCAGAGAGCCACTTATTGTGAGTAGATACAGAGCAAACAACAGTTCCCAGATCGCCATTGTAGGAGCCAATGTCTGTTCGATTGAAAGTCTCGATTACGAGATTATTGAGAGTGATCTTTATATGCAAGATTTGAGGTCTAGAACAAAGGTTGAGAAGTGCCGTTATCTTGCCCTAAAATGGACTCTTGCACTTCTTGTTGGTTTAGGCACAGGGAATGCTGACGCTACTAGATTTCAAGGAATGTACAGGTTTCTTGAGGCCTTTGCAGTGTATGCTGGTTGTAATTTGATTTTGGCAATTGCTGCAGCAGCCCTATGTGCTTATATTGCTCCTGCGGCAGCAGGCTCAGGCATACCTGAGGTGAAGGCATACCTCAATGGGGTTGATGCTCATTCTATACTCGCTCCGAGTACCCTCTTTGTAAAGATTTTTGGCTCAATTTTTGGGGTGGCCGGGGGATTTGTCGTGGCTGTAGTGGCTGTGGTATTGAGAGGCTTCATACAGTTATGCCGAGGGGGAAGATGTGGTCTTTTCGGGGAAGGAGGCTTGATAATGTTTGATGTTAGTTCAGAAATCCCTTCATACGAACTGCCTGACGTCCTGGCAGTAATGCTCATTGGAGTTATCGGAGGACTTTTGGGAAGCCTTTACAATTATCTAGTGCACAAAGTCCTTCGCACTTACAGTGTCATAAATGAGAGAGGCCCCAAAGTGAAAATTCTACTTGTGATCGTTATCAACCTCTTGACATCTTGTGCTTCGTACGGCCTTCCATGGCTATCTCGATGTGTCCCTTGCCCTCCTAACTTGGGGGATAAGTGTCCCACCGGAGGTCGCTCTGGGAATTACAAGAGTTTCCAATGTCCACCAAACCATTACAATGATCTTGCCTCTCTCTTTTTCTCTCCCAATGATGATACTATCCGGAACCTATTAACATCAGGTGCTATCAAGGAATTTCAGATTTCTACTCTTATAACTTTCTTTGTGGTGATATACTTCCTTGGAATTATCACCTATGGCATTGCCATTCCCTCAGGCCTCTTCATTCCTGTTATTCTTGCTGGAGCCTCATATGGGCGTCTTGCTTCTCGCCTTTTAAGTTCGTTCACTGTTCTCGATGTGGGTATGTTCGCCCTCCTTGGAGCTGCATCGTTCCTTGGTGGTACCATGAGAATGACAGTTTCTATTTGTGTCATACTTCTTGAGCTCACTAATAACCTCTTGATACTCCCTTTGGTGATGCTAATTGTGAAAATGAAGGGCCTGCCTTATTTAGAAGCAGTTGCAGAACCATACATGAGGCATTTAACAGCAGGAGATGTTGTTTCTGGGGCTTTATTCACATTTTCTGGGGTTGAAAAAGTGAGGAATATTGTTCATGCTTTGAGGGTAACACAACATAACGGTTTTCCTGTGATTGATGAGCCTCCATTCTCAGAAGCTCCTCAGTTGTGTGGACTGGTGTTTAGGTCTCATTTGCTTGTGCTTCTTAAACAGAGGAAGTTCACAAAGCAAAAGGTTATGACTGGATCTACCATTATGAAGAACTTCGAAGCACATGATTTTGCAAAGCCAGGATTAGGCAAGGGAATCAAGCTAGGTGATATTCATATTGGGGAAGAGGAGATGGAAATGTATGTTGATCTTCATCCAGTCACAAACACATCACCGTACACAGTGGTGGAAACCATGTCTCTTGCAAAAGCTGCTCTTCTTTTCAGAGAGCTTGGCCTTAGGCATTTGCTGGTGGTGCCAAAGACACCAGGAGTAAAGACCTCCTATTGTTGGGATATTGACAAGGCATGA 1890 0.4439 MDDRGSRIRIQENMEERESGNDEKGTLREPLIVSRYRANNSSQIAIVGANVCSIESLDYEIIESDLYMQDLRSRTKVEKCRYLALKWTLALLVGLGTGNADATRFQGMYRFLEAFAVYAGCNLILAIAAAALCAYIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSIFGVAGGFVVAVVAVVLRGFIQLCRGGRCGLFGEGGLIMFDVSSEIPSYELPDVLAVMLIGVIGGLLGSLYNYLVHKVLRTYSVINERGPKVKILLVIVINLLTSCASYGLPWLSRCVPCPPNLGDKCPTGGRSGNYKSFQCPPNHYNDLASLFFSPNDDTIRNLLTSGAIKEFQISTLITFFVVIYFLGIITYGIAIPSGLFIPVILAGASYGRLASRLLSSFTVLDVGMFALLGAASFLGGTMRMTVSICVILLELTNNLLILPLVMLIVKMKGLPYLEAVAEPYMRHLTAGDVVSGALFTFSGVEKVRNIVHALRVTQHNGFPVIDEPPFSEAPQLCGLVFRSHLLVLLKQRKFTKQKVMTGSTIMKNFEAHDFAKPGLGKGIKLGDIHIGEEEMEMYVDLHPVTNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKTPGVKTSYCWDIDKA 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1404 629 MobiDBLite consensus disorder prediction 1 24 - -
Lele33g1404 629 Gene3D Clc chloride channel 78 182 - -
Lele33g1404 629 SUPERFAMILY Clc chloride channel 65 444 IPR014743 -
Lele33g1404 629 PRINTS Chloride channel signature 403 419 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele33g1404 629 PRINTS Chloride channel signature 138 155 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele33g1404 629 PRINTS Chloride channel signature 421 440 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele33g1404 629 PRINTS Chloride channel signature 169 188 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele33g1404 629 Pfam Voltage gated chloride channel 126 182 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele33g1404 629 Pfam Voltage gated chloride channel 182 445 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele33g1404 629 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 181 617 - -
Lele33g1404 629 CDD CBS_pair_voltage-gated_CLC_euk_bac 465 614 - -
Lele33g1404 629 Gene3D Clc chloride channel 183 449 - -
Lele33g1404 629 SUPERFAMILY CBS-domain pair 458 614 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1404 Lele-ChrLele33 24581032 24586474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1404 181 617 Ion Channels AT5G49890 67.615 0.0 608