Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1346 ATGGAGACACAGTTCAGTCACTCTCTCTTCGACAGGCACCACATCTTCAAGTCTAAGACTCCCGCCGTTAAATGGGTTAAAGCATGGGTTCCCCAGGATGTTGTGTCCACTGGTGGGAAGTGCATGCTTTACAGATGGGATTCATTAAAGCCTTTGAAGGATAAGGAAAAAGAACCATCAGTGCCTGAGCCAGAACCTGAGCCGACTACTGAAGTGCTTTTTCTCTGTAGCTATGAAGGCTGTGGGAAAACTTTTATAGATGCGGGTGCTTTGAGAAAGCATTCTCACATCCATGGAGAAAGGCTATTTGTTTGTCACTATGAGGGTTATGGAAAGATCTGTGGAAAGATTGTCAGATCTGCATTTAACAGTGTTCAGAATATTCATTTTCTGTTGCAGAAATTTCTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACAGGGGAAAGGCCTTATGTGTGTCCCGTTGAAGGTTGTGGGAAGGCCTTCTCCCTCGATTTCAACCTCAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAAAATCACATTGCAGCACACCATGAAAAGAATGGATCTGTGGATCCGAACGGGACAAAGTATAATACTCCGCCACCGGAGAAGCCGGCAAAAGCTACAAAACCTTCTGGGGGTGCTTATGCTTCTGCATCATCTGATCGGCCCTTTGTTTGTCCTTATGAAGGGTGTGAAAAGGCATATATCCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGTGATGAAAATGTTGCAGAGAATAATGCTCAGGCTAATAATAACAATGCCGACAATGATTTGGACGAAGCAAGCGATCAAGATGCCGCCTATAATGGTGGGAAACGATCAAATGGTAGAATTCAGAAGCAAAGTAAGCCCAAACCAAACTTGAAGATGCCTCCATCAAAAATTGCGCGGCGCAAAGCAGCATCGTCAACACCCTCTTCTGTGACCCCTATGAAGGTGATTAAGAAACCTTGGCCGGTGAAAGAAGAAACCTTCGAGGAAGAAGACAGTGAAGAAACAGAGGAGGATCGGGACAACGTTGAAGATGGTTGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1209 0.4367 METQFSHSLFDRHHIFKSKTPAVKWVKAWVPQDVVSTGGKCMLYRWDSLKPLKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERLFVCHYEGYGKICGKIVRSAFNSVQNIHFLLQKFLDSSKLKRHFLIHTGERPYVCPVEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKNGSVDPNGTKYNTPPPEKPAKATKPSGGAYASASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENNAQANNNNADNDLDEASDQDAAYNGGKRSNGRIQKQSKPKPNLKMPPSKIARRKAASSTPSSVTPMKVIKKPWPVKEETFEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1346 402 SUPERFAMILY beta-beta-alpha zinc fingers 75 99 IPR036236 -
Lele33g1346 402 MobiDBLite consensus disorder prediction 276 402 - -
Lele33g1346 402 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 14 377 - -
Lele33g1346 402 SUPERFAMILY beta-beta-alpha zinc fingers 135 188 IPR036236 -
Lele33g1346 402 ProSitePatterns Zinc finger C2H2 type domain signature. 186 209 IPR013087 -
Lele33g1346 402 Gene3D Classic Zinc Finger 153 182 - -
Lele33g1346 402 Gene3D Classic Zinc Finger 183 213 - -
Lele33g1346 402 SUPERFAMILY beta-beta-alpha zinc fingers 245 273 IPR036236 -
Lele33g1346 402 MobiDBLite consensus disorder prediction 208 247 - -
Lele33g1346 402 MobiDBLite consensus disorder prediction 284 298 - -
Lele33g1346 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 98 IPR013087 -
Lele33g1346 402 Coils Coil 285 305 - -
Lele33g1346 402 ProSitePatterns Zinc finger C2H2 type domain signature. 76 98 IPR013087 -
Lele33g1346 402 FunFam zinc finger transcription factor YY1 181 212 - -
Lele33g1346 402 FunFam zinc finger transcription factor YY1 74 99 - -
Lele33g1346 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 213 IPR013087 -
Lele33g1346 402 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Lele33g1346 402 ProSitePatterns Zinc finger C2H2 type domain signature. 156 180 IPR013087 -
Lele33g1346 402 FunFam Zinc finger protein 410 152 179 - -
Lele33g1346 402 Gene3D Classic Zinc Finger 227 295 - -
Lele33g1346 402 Pfam Zinc finger, C2H2 type 154 178 IPR013087 -
Lele33g1346 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 183 IPR013087 -
Lele33g1346 402 Gene3D Classic Zinc Finger 74 99 - -
Lele33g1346 402 FunFam Zinc finger transcription factor YY1 225 296 - -
Lele33g1346 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Lele33g1346 402 SMART c2h2final6 250 275 IPR013087 -
Lele33g1346 402 SMART c2h2final6 74 98 IPR013087 -
Lele33g1346 402 SMART c2h2final6 184 208 IPR013087 -
Lele33g1346 402 SMART c2h2final6 154 178 IPR013087 -
Lele33g1346 402 MobiDBLite consensus disorder prediction 365 379 - -
Lele33g1346 402 Gene3D Classic Zinc Finger 100 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1346 Lele-ChrLele33 24099429 24103498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1346 10 388 C2H2 Transcription Factor Family AT4G06634 57.436 3.11e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele33g1346 zf-C2H2 0.00015 CL0361