Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele33g1337 | ATGGACTGTAACCCATCTTTACTTCATCTCTCTTTCTGTGAAGATTTGCCATATCTGATTTGCTTTGATTTTGTGCAACTCATACTCATCTTAAGGAGACATGGGACAATGGCCATTATTAGTCAAACCAATTCAGCCAGTGATGGACTTCCTAAAGTTAATTGGTTGGATCATGCCAGTGCACATGAGAACTTTTCATGTCAAAACAAGTTTTTGAGTTCCAATTTTCTATTCTCCTTGCCAACTCAAAAACCATGCTCTGAAGAAGCCTTGTGTGGGAGATTTGTACTCAGACAAAATCAAAATATTCAAAGTTTGCAGAGAGCACAAGTTGAGAAGGCTTGGCGTGCTCTTTCAAGTCTACAGAATTCTTGCCGGAACTATGCCCAACTGGGAAAAACTGTACAAATAAGTACTCCGGCTTTTGCTGACATGAGAACAACTACAGGGCAGAGAATTTCTGAGAATGATAGATGTTCTAAGTTTAATAATTTTAACGTCTTAAGTGAAAACAACGTGAAATCTAATCAATACTTTCCTTCAAGTAATCCTATAGCTGAAGGAGGGGATAGATTGAAGTGCCTTGATGAAGTCACAACTCCAACAGTCAATAATCATTGTTCTCAAGTTTTGGATGGTTCAGTGAAAAACTGTACTAAGGACACTGCTGAAGTTAACAGGTCAACAAATTGTATGGCTAACAATGTTGATGATGACGACGACGTTATACTTGGGAGCATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGACTTGCACTCCTCAACCGTCAACAGCCAAGTTTCCTCCTATTTCTCCAACTGTTGATGCAAATAGTTTTGCTAGACAAGGGGAAAATGGTTTGCCACCGGACTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTGAAGCAGCAAACCACTTGCAGGAGTGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAGCCTTAATTCTTCACAGATAGCAAAGCTTCGCCAAGACAGGTCACTGTTAAATAAGCAAATTCAGCAGCTTGAAAGATATATTCAATCCTGTAAGCTTGATGAGGAGAGACAAAACTCACATTTTTCTGCGTCCACAGCACCTCCAACTTCTTTTCAGTTTGAGACACCAAATCAAACTGTACTCAGGGGTGGATCAATGAGATATGATACCCAGGCTTATATGAATAATGAGCCATTCGGAGCATCATTCCAGTCATTGTCATTCTCTTCTGTTGATAAGTATGGCATGTCGTCAGGCCCAATGGAGAGAGAAACATTTATTCCAAAGATAATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGTGACCAAAATTTTTCTTGGACTAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCCACAATGAGCGGATGTGATGTTTTTGTCTTAATGCCTACCGGTGGAGGGAAGAGTCTAACCTACCAGCTACCTGGTCTCATTTGTCCAGGTATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATTCCTGCTACATACTTAAGTTCCAATATGGATTGGTCCGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTATTGTAGATACAAGTTCTTATATGTAACACCTGAAAAGGTTGCCAGAAGTGATGTTCTTTTGCGGCAATTGGAGAGTTTACATGTCCGTGAGTTGCTTGCTAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTTCCCAATACTCCTGTTCTAGCTTTGACGGCTACAGCAACAGCCAGCGTAAAAGAAGATGTTGTTCAAGCTCTGGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAGTGTTTGGAGGACATTGATAAATTCATTAGGGAAAATCACTATGACGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGCTGCTGAAAAATTACAGGAATGCGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGGGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGCTCATCCTGTGTATTATATTATAACTATAGTGACTATATACGAGTTAAACACATGATAACTCAAGGAGCAATAGAGCAAAGTCCAATGACATCTGGATATAATCGATCAAATTTGACAAATTCAGGGAGGATGCTAGAAACTAACTCTGCAAACCTTCAGCGGATGGTAAGCTATTGTGAAAATGATGTTGATTGTCGACGACTTCTGCAGCTTGCTCATTTTGGGGAGAGGTTTGATCCTTCAAACTGTAAGAAAACATGTGACAACTGTTTGAAGATCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGAGAACGGGGCAGAATTTTTCTTCATCTCATATCTTAGAAGTGTACCGGGGTTCCTTAAACCAGTTTGTCAAGAAACACCGGCATGAAACAGTACGGCTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTATTGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCAATATTAAAGGTCAATGAGTCCAAGGTCCCTAATCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGCAAAAAGCTTCAAAGTTTGGAACTTCTGGCATAACACCAGCTAAAGGCTCTCTGACATCTGGGAAGGTGAATTTACCACAAAATGATGCTCCTGCCTCGCCTCAAGCTGAAGTGGACTTGAATCTTTCAGCTAAGTTGTTCTCTGCTCTGCGGATGCTGCGGACAGCTATTGTCAAAGAAGCTGGAGAGGGAGTCATGGCCTACCACATTTTTGGAAATGCTACGCTGCAGCAGATAAGCAAGAGATTACCAAGGACAAAAGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGACCAAGATAAACAAGTATGGAGATCGGGTACTGGAAACCATTGAAAATACCATAAGGGAATATAACAAGTTGGACAAAAGCAGCAGCTGGAGCAACGAAAGTAATGACTCTGCTAAAAGGAGACGAGCTGTAGAAGGGAATGATGATGAAGATGACGGGACTAGAAGTAATGGTCGTTCAAAGAAAAGGACGATAAAGAGAAACAACATAAAAGCTGTGGTTTATGATGATTCTGCAGAAGAAGATTTTAAAGATTGCCAAGACGAAGATCTAGATTTTGACAACATAGAAAATACTGCAGTGGATATTAATCGTAGGAATTCCGAAGGCAGGGTCCCTCCGCAATGGACATAG | 3672 | 0.405 | MDCNPSLLHLSFCEDLPYLICFDFVQLILILRRHGTMAIISQTNSASDGLPKVNWLDHASAHENFSCQNKFLSSNFLFSLPTQKPCSEEALCGRFVLRQNQNIQSLQRAQVEKAWRALSSLQNSCRNYAQLGKTVQISTPAFADMRTTTGQRISENDRCSKFNNFNVLSENNVKSNQYFPSSNPIAEGGDRLKCLDEVTTPTVNNHCSQVLDGSVKNCTKDTAEVNRSTNCMANNVDDDDDVILGSIDVDQIVENYQSTCTPQPSTAKFPPISPTVDANSFARQGENGLPPDLCSDCIHGYKVALCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSLLNKQIQQLERYIQSCKLDEERQNSHFSASTAPPTSFQFETPNQTVLRGGSMRYDTQAYMNNEPFGASFQSLSFSSVDKYGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFSWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPGLICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDYCRYKFLYVTPEKVARSDVLLRQLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKAAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSGRMLETNSANLQRMVSYCENDVDCRRLLQLAHFGERFDPSNCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKRTGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVIEDFLVEDVKKSDIYGSVSSILKVNESKVPNLFGGQKIILRVPSSQKASKFGTSGITPAKGSLTSGKVNLPQNDAPASPQAEVDLNLSAKLFSALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGISKTKINKYGDRVLETIENTIREYNKLDKSSSWSNESNDSAKRRRAVEGNDDEDDGTRSNGRSKKRTIKRNNIKAVVYDDSAEEDFKDCQDEDLDFDNIENTAVDINRRNSEGRVPPQWT | 1223 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele33g1337 | 1223 | SUPERFAMILY | HRDC-like | 1051 | 1123 | IPR010997 | GO:0000166|GO:0044237 | |
Lele33g1337 | 1223 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 473 | 948 | IPR004589 | GO:0004386|GO:0006310 | |
Lele33g1337 | 1223 | Gene3D | HRDC domain | 1044 | 1131 | IPR044876 | - | |
Lele33g1337 | 1223 | ProSiteProfiles | Rhodanese domain profile. | 704 | 746 | IPR001763 | - | |
Lele33g1337 | 1223 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 456 | 813 | IPR027417 | - | |
Lele33g1337 | 1223 | FunFam | Bloom syndrome, RecQ helicase | 672 | 892 | - | - | |
Lele33g1337 | 1223 | Pfam | RQC domain | 894 | 1010 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Lele33g1337 | 1223 | ProSiteProfiles | HRDC domain profile. | 1048 | 1130 | IPR002121 | GO:0003676 | |
Lele33g1337 | 1223 | Pfam | Helicase conserved C-terminal domain | 688 | 794 | IPR001650 | - | |
Lele33g1337 | 1223 | MobiDBLite | consensus disorder prediction | 1131 | 1169 | - | - | |
Lele33g1337 | 1223 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 670 | 938 | IPR027417 | - | |
Lele33g1337 | 1223 | Coils | Coil | 339 | 359 | - | - | |
Lele33g1337 | 1223 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 489 | 664 | IPR014001 | - | |
Lele33g1337 | 1223 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 603 | 612 | IPR002464 | - | |
Lele33g1337 | 1223 | Gene3D | - | 895 | 1004 | IPR036388 | - | |
Lele33g1337 | 1223 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 689 | 832 | IPR001650 | - | |
Lele33g1337 | 1223 | MobiDBLite | consensus disorder prediction | 1141 | 1165 | - | - | |
Lele33g1337 | 1223 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 453 | 1138 | - | - | |
Lele33g1337 | 1223 | CDD | SF2_C_RecQ | 672 | 804 | - | - | |
Lele33g1337 | 1223 | SMART | RQC_2 | 897 | 1007 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Lele33g1337 | 1223 | Gene3D | - | 672 | 890 | IPR027417 | - | |
Lele33g1337 | 1223 | Pfam | DEAD/DEAH box helicase | 483 | 651 | IPR011545 | GO:0003676|GO:0005524 | |
Lele33g1337 | 1223 | SMART | hrdc7 | 1048 | 1130 | IPR002121 | GO:0003676 | |
Lele33g1337 | 1223 | SMART | helicmild6 | 714 | 795 | IPR001650 | - | |
Lele33g1337 | 1223 | SMART | ultradead3 | 477 | 680 | IPR014001 | - | |
Lele33g1337 | 1223 | FunFam | ATP-dependent DNA helicase RecQ | 454 | 671 | - | - | |
Lele33g1337 | 1223 | Pfam | HRDC domain | 1052 | 1120 | IPR002121 | GO:0003676 | |
Lele33g1337 | 1223 | Pfam | RecQ zinc-binding | 806 | 888 | IPR032284 | - | |
Lele33g1337 | 1223 | CDD | DEXHc_RecQ | 469 | 671 | - | - | |
Lele33g1337 | 1223 | Gene3D | - | 446 | 671 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele33g1337 | Lele-ChrLele33 | 24032038 | 24042465 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele33g1337 | 703 | 826 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 25.197 | 8.04e-07 | 51.2 |