Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1337 ATGGACTGTAACCCATCTTTACTTCATCTCTCTTTCTGTGAAGATTTGCCATATCTGATTTGCTTTGATTTTGTGCAACTCATACTCATCTTAAGGAGACATGGGACAATGGCCATTATTAGTCAAACCAATTCAGCCAGTGATGGACTTCCTAAAGTTAATTGGTTGGATCATGCCAGTGCACATGAGAACTTTTCATGTCAAAACAAGTTTTTGAGTTCCAATTTTCTATTCTCCTTGCCAACTCAAAAACCATGCTCTGAAGAAGCCTTGTGTGGGAGATTTGTACTCAGACAAAATCAAAATATTCAAAGTTTGCAGAGAGCACAAGTTGAGAAGGCTTGGCGTGCTCTTTCAAGTCTACAGAATTCTTGCCGGAACTATGCCCAACTGGGAAAAACTGTACAAATAAGTACTCCGGCTTTTGCTGACATGAGAACAACTACAGGGCAGAGAATTTCTGAGAATGATAGATGTTCTAAGTTTAATAATTTTAACGTCTTAAGTGAAAACAACGTGAAATCTAATCAATACTTTCCTTCAAGTAATCCTATAGCTGAAGGAGGGGATAGATTGAAGTGCCTTGATGAAGTCACAACTCCAACAGTCAATAATCATTGTTCTCAAGTTTTGGATGGTTCAGTGAAAAACTGTACTAAGGACACTGCTGAAGTTAACAGGTCAACAAATTGTATGGCTAACAATGTTGATGATGACGACGACGTTATACTTGGGAGCATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGACTTGCACTCCTCAACCGTCAACAGCCAAGTTTCCTCCTATTTCTCCAACTGTTGATGCAAATAGTTTTGCTAGACAAGGGGAAAATGGTTTGCCACCGGACTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTGAAGCAGCAAACCACTTGCAGGAGTGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAGCCTTAATTCTTCACAGATAGCAAAGCTTCGCCAAGACAGGTCACTGTTAAATAAGCAAATTCAGCAGCTTGAAAGATATATTCAATCCTGTAAGCTTGATGAGGAGAGACAAAACTCACATTTTTCTGCGTCCACAGCACCTCCAACTTCTTTTCAGTTTGAGACACCAAATCAAACTGTACTCAGGGGTGGATCAATGAGATATGATACCCAGGCTTATATGAATAATGAGCCATTCGGAGCATCATTCCAGTCATTGTCATTCTCTTCTGTTGATAAGTATGGCATGTCGTCAGGCCCAATGGAGAGAGAAACATTTATTCCAAAGATAATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGTGACCAAAATTTTTCTTGGACTAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCCACAATGAGCGGATGTGATGTTTTTGTCTTAATGCCTACCGGTGGAGGGAAGAGTCTAACCTACCAGCTACCTGGTCTCATTTGTCCAGGTATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATTCCTGCTACATACTTAAGTTCCAATATGGATTGGTCCGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTATTGTAGATACAAGTTCTTATATGTAACACCTGAAAAGGTTGCCAGAAGTGATGTTCTTTTGCGGCAATTGGAGAGTTTACATGTCCGTGAGTTGCTTGCTAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTTCCCAATACTCCTGTTCTAGCTTTGACGGCTACAGCAACAGCCAGCGTAAAAGAAGATGTTGTTCAAGCTCTGGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAGTGTTTGGAGGACATTGATAAATTCATTAGGGAAAATCACTATGACGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGCTGCTGAAAAATTACAGGAATGCGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGGGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGCTCATCCTGTGTATTATATTATAACTATAGTGACTATATACGAGTTAAACACATGATAACTCAAGGAGCAATAGAGCAAAGTCCAATGACATCTGGATATAATCGATCAAATTTGACAAATTCAGGGAGGATGCTAGAAACTAACTCTGCAAACCTTCAGCGGATGGTAAGCTATTGTGAAAATGATGTTGATTGTCGACGACTTCTGCAGCTTGCTCATTTTGGGGAGAGGTTTGATCCTTCAAACTGTAAGAAAACATGTGACAACTGTTTGAAGATCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGAGAACGGGGCAGAATTTTTCTTCATCTCATATCTTAGAAGTGTACCGGGGTTCCTTAAACCAGTTTGTCAAGAAACACCGGCATGAAACAGTACGGCTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTATTGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCAATATTAAAGGTCAATGAGTCCAAGGTCCCTAATCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGCAAAAAGCTTCAAAGTTTGGAACTTCTGGCATAACACCAGCTAAAGGCTCTCTGACATCTGGGAAGGTGAATTTACCACAAAATGATGCTCCTGCCTCGCCTCAAGCTGAAGTGGACTTGAATCTTTCAGCTAAGTTGTTCTCTGCTCTGCGGATGCTGCGGACAGCTATTGTCAAAGAAGCTGGAGAGGGAGTCATGGCCTACCACATTTTTGGAAATGCTACGCTGCAGCAGATAAGCAAGAGATTACCAAGGACAAAAGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGACCAAGATAAACAAGTATGGAGATCGGGTACTGGAAACCATTGAAAATACCATAAGGGAATATAACAAGTTGGACAAAAGCAGCAGCTGGAGCAACGAAAGTAATGACTCTGCTAAAAGGAGACGAGCTGTAGAAGGGAATGATGATGAAGATGACGGGACTAGAAGTAATGGTCGTTCAAAGAAAAGGACGATAAAGAGAAACAACATAAAAGCTGTGGTTTATGATGATTCTGCAGAAGAAGATTTTAAAGATTGCCAAGACGAAGATCTAGATTTTGACAACATAGAAAATACTGCAGTGGATATTAATCGTAGGAATTCCGAAGGCAGGGTCCCTCCGCAATGGACATAG 3672 0.405 MDCNPSLLHLSFCEDLPYLICFDFVQLILILRRHGTMAIISQTNSASDGLPKVNWLDHASAHENFSCQNKFLSSNFLFSLPTQKPCSEEALCGRFVLRQNQNIQSLQRAQVEKAWRALSSLQNSCRNYAQLGKTVQISTPAFADMRTTTGQRISENDRCSKFNNFNVLSENNVKSNQYFPSSNPIAEGGDRLKCLDEVTTPTVNNHCSQVLDGSVKNCTKDTAEVNRSTNCMANNVDDDDDVILGSIDVDQIVENYQSTCTPQPSTAKFPPISPTVDANSFARQGENGLPPDLCSDCIHGYKVALCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSLLNKQIQQLERYIQSCKLDEERQNSHFSASTAPPTSFQFETPNQTVLRGGSMRYDTQAYMNNEPFGASFQSLSFSSVDKYGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFSWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPGLICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDYCRYKFLYVTPEKVARSDVLLRQLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKAAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSGRMLETNSANLQRMVSYCENDVDCRRLLQLAHFGERFDPSNCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKRTGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVIEDFLVEDVKKSDIYGSVSSILKVNESKVPNLFGGQKIILRVPSSQKASKFGTSGITPAKGSLTSGKVNLPQNDAPASPQAEVDLNLSAKLFSALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGISKTKINKYGDRVLETIENTIREYNKLDKSSSWSNESNDSAKRRRAVEGNDDEDDGTRSNGRSKKRTIKRNNIKAVVYDDSAEEDFKDCQDEDLDFDNIENTAVDINRRNSEGRVPPQWT 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1337 1223 SUPERFAMILY HRDC-like 1051 1123 IPR010997 GO:0000166|GO:0044237
Lele33g1337 1223 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 473 948 IPR004589 GO:0004386|GO:0006310
Lele33g1337 1223 Gene3D HRDC domain 1044 1131 IPR044876 -
Lele33g1337 1223 ProSiteProfiles Rhodanese domain profile. 704 746 IPR001763 -
Lele33g1337 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 813 IPR027417 -
Lele33g1337 1223 FunFam Bloom syndrome, RecQ helicase 672 892 - -
Lele33g1337 1223 Pfam RQC domain 894 1010 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele33g1337 1223 ProSiteProfiles HRDC domain profile. 1048 1130 IPR002121 GO:0003676
Lele33g1337 1223 Pfam Helicase conserved C-terminal domain 688 794 IPR001650 -
Lele33g1337 1223 MobiDBLite consensus disorder prediction 1131 1169 - -
Lele33g1337 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 938 IPR027417 -
Lele33g1337 1223 Coils Coil 339 359 - -
Lele33g1337 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 489 664 IPR014001 -
Lele33g1337 1223 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 603 612 IPR002464 -
Lele33g1337 1223 Gene3D - 895 1004 IPR036388 -
Lele33g1337 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 832 IPR001650 -
Lele33g1337 1223 MobiDBLite consensus disorder prediction 1141 1165 - -
Lele33g1337 1223 PANTHER DNA HELICASE RECQ FAMILY MEMBER 453 1138 - -
Lele33g1337 1223 CDD SF2_C_RecQ 672 804 - -
Lele33g1337 1223 SMART RQC_2 897 1007 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele33g1337 1223 Gene3D - 672 890 IPR027417 -
Lele33g1337 1223 Pfam DEAD/DEAH box helicase 483 651 IPR011545 GO:0003676|GO:0005524
Lele33g1337 1223 SMART hrdc7 1048 1130 IPR002121 GO:0003676
Lele33g1337 1223 SMART helicmild6 714 795 IPR001650 -
Lele33g1337 1223 SMART ultradead3 477 680 IPR014001 -
Lele33g1337 1223 FunFam ATP-dependent DNA helicase RecQ 454 671 - -
Lele33g1337 1223 Pfam HRDC domain 1052 1120 IPR002121 GO:0003676
Lele33g1337 1223 Pfam RecQ zinc-binding 806 888 IPR032284 -
Lele33g1337 1223 CDD DEXHc_RecQ 469 671 - -
Lele33g1337 1223 Gene3D - 446 671 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1337 Lele-ChrLele33 24032038 24042465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1337 703 826 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 8.04e-07 51.2