Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele33g1309 | ATGGCATCATGTGGGCGAAACTGGACAGACCATGTGGCGCTTAATTTCCGCATTTCCTTCCGGTTACGTCATGTGTGGGTCGGTAGAATAGCCAATCAACAATCAATACAGTGTGTCGCTCGAAGTAACTTGCTGCTTTCAGAAATCAAGTACTCTTCAACCGCGAGATTGAAAGTCAAAATGGATGATTGGAAGGATAGACAGACAGCCTACTGGTTGGCACTAGGTCCTGCAAGTTCTGTAAATTTGGAAATGGCAAGAGGAAGCAGGGGACGACACACAATTGCTTCCCGTCAGTTTCGGCCTACACCATACCCTTTGCCTGCATGCGAAAAGGATATGTGTGAGACTTTATGCTCAAAGAAGTGCTCCACAGACTTGGATAAGAATGATTGGGAAAATGTGACATGTTCTGTGTGCATGGAATATCCACACAATGCAGTGCTTCTACTCTGCTCCTCTCACGTTAAGGGCTGTCATCCCTATATGTGTGGAACCAGTCTTCGTCATTCAAACTGCCTTGAGCAGTACAAGAAAGCTTATACTAAAGTTGTCGCGTCCGATTTGCCTCTTGAGAAGAGCGAAATCACAGAGCTTGCATGCCCTCTATGTAGAGGTCAGGTGAAAGGTTGGACTGTTGTGGAACATGCAAGAGAGTACCTTAATGCAAAGAAGAGAAGCTGCATGCAGGATAACTGCACATTTGTTGGGAACTACAAGGAGTTGAAGAAGCATGTTCGGGCAGAGCATCCCTCTTCAGCACATCCACGCACGGTAGATCCTGCTCATGAACAGAAATGGCGGTTGCTTGAGTGGGAACGCGAGCGACAAGATGTTATCAGCACAGTAACATCAACCATGCCTGGGGCAAGGGTTTTTGGAGATTATATAGTTGAAGGAAATCATAATGATCTCACTTCAGAAGATGAAGATGGGGATGATTCTAATGTTGTTGCTGCTGAAAGGAGTGGAAGATTTCACGTGGACTTCGATGCAATGAATTTCTTTTTGCTATTTCATGCGGTTCGGCAAGAGAATGAACTTAACGTTAGTAGACAACAATTGAGTCAAGCCAGTGGTCTCCATGCACCTTCTCCTGTTGGCAGCGCGGATTTCTCTGATCAAGATGATGGCAATAATGTGTATAGGGAAGGTGTTGGTTTGTCACTAGCTAGCCGTCTCCGTCGCCATGGCCGTGGCAGCAACACATGCGTAGAAAATGCCAATGTTTTTGTTTCAACCATAACTAGAAAACTTTTTCTCCATTGGCTTGGCATAGTTCCATGGCTTTTGCTGCCAATCAATGAGCTTGTTTCTCAAAAGTTGATCCCAATAATCTCAGTGATGCGTGAAATAACTCAAAATAGTGTTACTGAGGTATCGCCACAGCCAAAAATGCCGAAATCCAAACGCAATAAAACAGTGACACTCTCGAAGACAAAGAAAAAGGGGAGGGAACATAAAGAAGCAATAGTAAATGCTATAAAAGATGCTGCTGAAAAATACAGTTCAGTGTATGTGTTCTCTTTTGAAAACATGAGAAATAAAAAATTCAAGGAGTTCAGGGAGCAACTGAAATCTACCAGCAGGTTTTTCTTGGGATCGAACAAAGTCATGCAGGTCGCCCTAGGTCATTCTGCTGCGGATGAGATTAGACCTGGTCTTCATAAGGTTTCTAAGCTTCTACGAGGAGATGCTGGAATGGTTTTTACAGATTTGGCAAAAGAAGAAGTTGAAAGGTTATTTAATCAATTTGAGGAGTATGACTATGCGAGAACAGGAAGCAATGCAACTGAAAAGGTGGAACTCAAAGAAGGTCCTTTGGAGCAGTTCACACATGAGATGGAGCCATTTCTACGGAAGCAAGGCATGCCTGTCCGGCTAAATAAAGGAGTGGTGGAACTTGTCTCAGATTTTGTTGTTTGTGAGGAGGGGAAGCCGTTGTCACCTGAGGCATCTCGCATACTGCGTTTACTGGGGATTCAGATGGCAACATTTAAACTGCATCTGATATGCAGATGGAGTCCTGACGATTTTGAACTGTACATACAAGGACCAGAAGATTCAGACGTCGAAACCAATTAA | 2085 | 0.4398 | MASCGRNWTDHVALNFRISFRLRHVWVGRIANQQSIQCVARSNLLLSEIKYSSTARLKVKMDDWKDRQTAYWLALGPASSVNLEMARGSRGRHTIASRQFRPTPYPLPACEKDMCETLCSKKCSTDLDKNDWENVTCSVCMEYPHNAVLLLCSSHVKGCHPYMCGTSLRHSNCLEQYKKAYTKVVASDLPLEKSEITELACPLCRGQVKGWTVVEHAREYLNAKKRSCMQDNCTFVGNYKELKKHVRAEHPSSAHPRTVDPAHEQKWRLLEWERERQDVISTVTSTMPGARVFGDYIVEGNHNDLTSEDEDGDDSNVVAAERSGRFHVDFDAMNFFLLFHAVRQENELNVSRQQLSQASGLHAPSPVGSADFSDQDDGNNVYREGVGLSLASRLRRHGRGSNTCVENANVFVSTITRKLFLHWLGIVPWLLLPINELVSQKLIPIISVMREITQNSVTEVSPQPKMPKSKRNKTVTLSKTKKKGREHKEAIVNAIKDAAEKYSSVYVFSFENMRNKKFKEFREQLKSTSRFFLGSNKVMQVALGHSAADEIRPGLHKVSKLLRGDAGMVFTDLAKEEVERLFNQFEEYDYARTGSNATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIQMATFKLHLICRWSPDDFELYIQGPEDSDVETN | 694 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele33g1309 | 694 | Pfam | Insertion domain in 60S ribosomal protein L10P | 591 | 661 | IPR040637 | - | |
| Lele33g1309 | 694 | Pfam | Ribosomal protein L10 | 484 | 585 | IPR001790 | - | |
| Lele33g1309 | 694 | PANTHER | MRNA TURNOVER PROTEIN 4 MRTO4 | 466 | 685 | - | - | |
| Lele33g1309 | 694 | SUPERFAMILY | Ribosomal protein L10-like | 485 | 607 | IPR043141 | - | |
| Lele33g1309 | 694 | Gene3D | - | 590 | 663 | IPR043164 | - | |
| Lele33g1309 | 694 | CDD | Ribosomal_P0_like | 486 | 649 | IPR033867 | GO:0000027 | |
| Lele33g1309 | 694 | FunFam | Ribosome assembly factor mrt4 | 590 | 663 | - | - | |
| Lele33g1309 | 694 | Gene3D | - | 495 | 676 | IPR043141 | - | |
| Lele33g1309 | 694 | FunFam | Ribosome assembly factor mrt4 | 494 | 593 | - | - | |
| Lele33g1309 | 694 | MobiDBLite | consensus disorder prediction | 353 | 378 | - | - | |
| Lele33g1309 | 694 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 255 | IPR013083 | - | |
| Lele33g1309 | 694 | Pfam | Protein of unknown function (DUF1644) | 192 | 281 | IPR012866 | - | |
| Lele33g1309 | 694 | Pfam | Protein of unknown function (DUF1644) | 133 | 186 | IPR012866 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele33g1309 | Lele-ChrLele33 | 23805018 | 23813334 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele33g1309 | 500 | 668 | Cytoplasmic Ribosomal Protein Gene Family | AT3G11250 | 21.387 | 2.98e-08 | 54.3 |