Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1292 ATGTCATTCCGAAGCATAGTTCGTGATGTAAGGGGCAGTTTTGGGAGCTTATCTAGGCGGAGCTTTGATGTCAACAGGCTGACTGGCCACCACCGAGGAAAGTCTCACGGATCTTTTCAAGATTTGCATGATCAGCCTCTAGTTATTCAAAGTAGCCGCTGGGCGAGCCTACCCCCGGAATTGCTATATGATGTTATTAGAAGGCTAGAAGAGAGTGAGAGCACATGGCCTGCTCGAAAGCATGTTGTTGCGTGTGCTGCAGTTTGCCGGTCCTGGAGGAACATGTGCAAGGAAATTGTGAAGGGCCCAGAATTCTGTGGAAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAATTTAGCATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAACGGAAAATTTCTCTTATCTGCCAAGAGGACGAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCCAGATCAAGTAGCACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACAAAGTTCATAATATATGATACACAGCCGCCATATACTTCTGCCCAAATACCGCCTCCAGGGACTGGGAAGACGAGCCGAAGGTTTTATTCCAAAAAGGTCTCGCCAAAGGTCCCATCTGGTACCTACAACATAGCTCAGGTGACATATGAGTTAAATGTATTGGGGACACGTGGCCCAAGGAGGATGCACTGTATTATGCATTCGATCCCTGTCTCTGCGCTTGATACGGATGGCACTGTTCCCGGCCAACCTGAGCTGCTTCCTTGCACCCTTGAGGATTCATTCCGTAGCATTTCCTTCTCGAAGTCTGTAGACCACTCTATTGAGTTCAGTAGTGCTCGATTCTCTGACATTGGGGGGGCATCCTGCAGCAACGATGATGAGAATAGCAAGATGAGACCCTTGATTCTGAAAAACAAACCTCCAAGATGGCACGAACAGCTTCAATGCTGGTGCCTCAACTTTCGTGGACGGGTGACAGTTGCTTCTGTCAAAAACTTCCAATTGATCGCAGCCACCCAGCCAGCTGCTGGCGCGTCTCAGCCTGCCCCACCAGATCATGACAAGATAATCCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTACCGATACCCCCTATCGGCTTTCCAGGCTTTCGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAG 1284 0.4727 MSFRSIVRDVRGSFGSLSRRSFDVNRLTGHHRGKSHGSFQDLHDQPLVIQSSRWASLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKGPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLAYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGKTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDTDGTVPGQPELLPCTLEDSFRSISFSKSVDHSIEFSSARFSDIGGASCSNDDENSKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGASQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1292 427 FunFam Tubby-like F-box protein 111 427 - -
Lele33g1292 427 Pfam Tub family 115 422 IPR000007 -
Lele33g1292 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Lele33g1292 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Lele33g1292 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Lele33g1292 427 PRINTS Tubby superfamily signature 334 351 IPR000007 -
Lele33g1292 427 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lele33g1292 427 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele33g1292 427 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele33g1292 427 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Lele33g1292 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Lele33g1292 427 Pfam F-box domain 54 100 IPR001810 GO:0005515
Lele33g1292 427 Gene3D - 49 99 - -
Lele33g1292 427 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Lele33g1292 427 PANTHER TUBBY-RELATED 29 425 - -
Lele33g1292 427 FunFam Tubby-like F-box protein 49 102 - -
Lele33g1292 427 ProSitePatterns Tub family signature 1. 352 365 IPR018066 -
Lele33g1292 427 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1292 Lele-ChrLele33 23704485 23706974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1292 1 427 TUB Transcription Factor Family AT1G76900 68.602 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele33g1292 Tub 7.5e-117 CL0395