Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1278 ATGAAACCCGGATCAAAAGCTATGGGAACAGATGAGAAAAACAAAAACCGACTTCGACTGGGAATGTTTCGAGCAATGTCTTCTGATGGAAGATCGACCAAATGGAAAGGAGAATCTTGGTGGTGGTCTAGTGGAAGTCTCCACTGCAAAGATTTTTCCGATTTGAATTGTATTGCTTCGTTACTGGCTTTGAGTGACTATTCACTTTTTAAAATGGCTGAAGTGGAAGAGTATCGCTGCTTCGTGGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAAGATTCATTTGAGAAGTTTGGAAATCTTCTTGAAGCCAGGGTTGCTGTAGACAAGTTCTCAGGTCGCTCTCGTGGTTTTGGATTTGTAACATTTGATGATCATAAAGCTATGGAAGATGCCATTAAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATTACTGTTGATAAGGCAAAACCTCAACAAGGATCCGCTAGAGATGATGGTGATCGGTACAGAGAAAATGGCCGTGATCGCAATTATAGACGAGATTATGGGGGTGGTCGAGGTTCTAATAGTGGTGAGTGCTTTAAGTGTGGCAAACCTGGTCATTTTGCTAGAGAGTGTCCTGAAGAAGAGGGAAGAGGTGGAAGGTATGGTGACAGAGAAAGTAGATATGGCAACAGTGGTGGTGGAGGTCGCTATGGCCCTGATAGAAATGCTGATCGTTATTCTGGTGGGCGAAATAGGGACGTCGATAGGCATGGGGATCATGGAAATGATCGATATAATCGCAGTGATCGTGCTGGACCTTATGAGAGGCGAGGAACAGGAGGCTCTCGTTCTGGATAG 840 0.4417 MKPGSKAMGTDEKNKNRLRLGMFRAMSSDGRSTKWKGESWWWSSGSLHCKDFSDLNCIASLLALSDYSLFKMAEVEEYRCFVGGLSWSTSDRKLKDSFEKFGNLLEARVAVDKFSGRSRGFGFVTFDDHKAMEDAIKAMNGMDLDGRTITVDKAKPQQGSARDDGDRYRENGRDRNYRRDYGGGRGSNSGECFKCGKPGHFARECPEEEGRGGRYGDRESRYGNSGGGGRYGPDRNADRYSGGRNRDVDRHGDHGNDRYNRSDRAGPYERRGTGGSRSG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1278 279 MobiDBLite consensus disorder prediction 203 218 - -
Lele33g1278 279 MobiDBLite consensus disorder prediction 157 181 - -
Lele33g1278 279 SUPERFAMILY RNA-binding domain, RBD 68 186 IPR035979 GO:0003676
Lele33g1278 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Lele33g1278 279 ProSiteProfiles Zinc finger CCHC-type profile. 192 207 IPR001878 GO:0003676|GO:0008270
Lele33g1278 279 Gene3D - 70 186 IPR012677 -
Lele33g1278 279 SMART rrm1_1 79 152 IPR000504 GO:0003723
Lele33g1278 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 150 IPR000504 GO:0003723
Lele33g1278 279 SUPERFAMILY Retrovirus zinc finger-like domains 183 210 IPR036875 GO:0003676|GO:0008270
Lele33g1278 279 MobiDBLite consensus disorder prediction 147 183 - -
Lele33g1278 279 MobiDBLite consensus disorder prediction 203 279 - -
Lele33g1278 279 Gene3D - 187 244 - -
Lele33g1278 279 Pfam Zinc knuckle 191 207 IPR001878 GO:0003676|GO:0008270
Lele33g1278 279 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 72 274 - -
Lele33g1278 279 MobiDBLite consensus disorder prediction 237 270 - -
Lele33g1278 279 SMART c2hcfinal6 191 207 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1278 Lele-ChrLele33 23602212 23604886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1278 80 174 Eukaryotic Initiation Factors Gene Family AT4G34110 30.526 2.49e-06 46.6