Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1276 ATGGGCCCTCATTTGAAGCTGGAAGCTGACCAAGACAATTGGGTTGATATGAAGATTATGAGCGTATCTTCATTTTCAGGACAGAAGGTTCTGCAGTGTGGAACTAACTACAAGGATAATGCTTATGAAAAGGAAGCATTGCCAATTGAAGAAACTACTTTGCCCAGAGGAAATGAGGATGTGGAAGTTAATATAACTGGGTGTGCAAAGTCTAGTGAGCCTTTGATAATTGGAGATACTTGTGATGATGATACTGAGTGTTCAAGTTCTTTTGGTGATACAGGATCTGGCACAGAGAATGCTTCAGCATTCAGTGATGATGAAGTGGTATCACATATGTATGCCGAAAACCCATTCTCATCCATGTTTTTTCAAGAGTGTGAGCCATCTCTAATAAGAAGGAAGAAGTTGACAAGTCACTGGAAGAGTTTCATACGCCCTCTGAGGTGGCGTTGTAAGCATATAGAATTAAAACTGAAGCAACTTCAATCTCAAGAACGTAAATACGAAAAAGAACTTGCAGCATATGATTACAGAAGGCAGCTTATGTCAGAAAATTTCTCATTAGATGAATGTGATACCAAGTCAGTTCCTTTACGTGAGGGAATTTGTGGGAAAAAAGTAATGAAGAGAAAGAAACGAAAGAGAGTTGAGGAGACATGTAATTTAGCATCTTACACATCTGACCACTGTGTATTCTCATACTATGAAGAAAAGGACTCTGCTGCTCATGCTCGTTTGAAAAATGTCAAAGTTGTTGCTGAAGCACGGAATCTTGAGAGTTATGAGGAGTTCAAGTGGAATGACATATCCTCTCATCTTGAGAATGACTTATCGATGTCTTCTCTTGACCAGGATGATACTGATAGAACCTTGGTGAAGATCTTTGAAAAGATTGAAGCAGCACAATCTGAAGTTCACAAATTGAGAATTCGAATTGATAAGGTTGTTAATGAAAATGTGGGGAAGTCCAGCTCTGTAAATAATTTGAACACGCTTGGGCTTGGTCCACCCAATGACTTGAATCTCTACCATATCAATTCTGCTTCACCTTCCGCAATCAGAAATACAGTATCTAAGAGAAATCAGTTCATGAGAAAAACCAAAGAATCTGTTGAAGAGCAGAAACCAGTTCCCCTCTCTCTAGCTTCATCTCCTTGCTTGGATGCAAAGAGAACTGTACCTATTTTTCGGCCTAATAGTTTGAAAGTTTGTTTTCCTTTAAAATTCAGTTTCTTTGGGAAGAAAAGAGGTAAAAGGAAGAAAGCTGGATCAAACTGGAAGGCTGGAGTTGGCGCTGAGATTGTTATTGCAGTAAAGATTCCAACATTTGTCGGACTTCAAAATGTGGGCCCAAATTTCCATGGGCCTTCGAAACCATTCATTACTGTCCAGTATAATCACCTTAACAAAAAATTATCATCGCGAGTAGCCACAAACCCTATCACGACATCTATTAATAAAAACCTTGAAACCCTTGCTTCTCGTCTTCTTCACTCCTCAGCGGCGCGGAGCTCAAGGTTAATCGACACCATGGTGAACGTTCCAAAGACCAAGAAGACTTACTGCAAGAATAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAGTACAAGAAGGGCAAGGATTCCCTTGCAGCTCAGGGAAAGCGCCGTTATGACCGTAAACAGTCAGGTTATGGTGGACAAACAAAGCCTGTGTTCCACAAAAAGGCTAAAACCACCAAGAAGATTGTCTTGAGGCTGCAATGCCAGAGTTGCAAGCATGTATCTCAACATGCTATTAAGAGGTGCAAGCACTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTGTTTTAG 1851 0.4079 MGPHLKLEADQDNWVDMKIMSVSSFSGQKVLQCGTNYKDNAYEKEALPIEETTLPRGNEDVEVNITGCAKSSEPLIIGDTCDDDTECSSSFGDTGSGTENASAFSDDEVVSHMYAENPFSSMFFQECEPSLIRRKKLTSHWKSFIRPLRWRCKHIELKLKQLQSQERKYEKELAAYDYRRQLMSENFSLDECDTKSVPLREGICGKKVMKRKKRKRVEETCNLASYTSDHCVFSYYEEKDSAAHARLKNVKVVAEARNLESYEEFKWNDISSHLENDLSMSSLDQDDTDRTLVKIFEKIEAAQSEVHKLRIRIDKVVNENVGKSSSVNNLNTLGLGPPNDLNLYHINSASPSAIRNTVSKRNQFMRKTKESVEEQKPVPLSLASSPCLDAKRTVPIFRPNSLKVCFPLKFSFFGKKRGKRKKAGSNWKAGVGAEIVIAVKIPTFVGLQNVGPNFHGPSKPFITVQYNHLNKKLSSRVATNPITTSINKNLETLASRLLHSSAARSSRLIDTMVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1276 616 SUPERFAMILY Zn-binding ribosomal proteins 513 605 IPR011332 GO:0006412
Lele33g1276 616 Coils Coil 152 179 - -
Lele33g1276 616 ProSitePatterns Ribosomal protein L44e signature. 574 585 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lele33g1276 616 PANTHER ELONGATION FACTOR 27 336 - -
Lele33g1276 616 CDD AT4G37440_like 59 319 IPR038745 -
Lele33g1276 616 Coils Coil 299 319 - -
Lele33g1276 616 Pfam Ribosomal protein L44 530 605 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lele33g1276 616 MobiDBLite consensus disorder prediction 541 559 - -
Lele33g1276 616 Gene3D - 512 616 - -
Lele33g1276 616 FunFam 60S ribosomal protein L44 512 616 - -
Lele33g1276 616 MobiDBLite consensus disorder prediction 541 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1276 Lele-ChrLele33 23584944 23592055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1276 512 616 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 95.238 5.24e-65 206