Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1200 ATGAAGGTTCTCATCCGAAACCTTTATCTTCAGCGATTTCAACTCCTGTTCAACATTGCAAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAGCTACGTGCTTTCTGGGACAAGCGTATCTCACAGGAGGTTAGCGGTGATGCTCTGGGTGAGGAATTTAAAGGCTATGTCTTCAAGATCACTGGTGGGTGTGACAAACAAGGTTTTCCAATGAAGCAAGGAGTGCTGACTCCTGGTCGTGTTCGTCTCTTGCTTCACAGAGGAACTCCTTGCTTCCGGGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTGCGTGGGTGCATTGTGAGCCCAGACCTCTCTGTTCTGAACTTGGTGATTGTGAAGAAGGGTGAAAATGATTTGCCTGGACTCACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTTAACCTCTCCAAGGAGGATGATGTCAGGAAGTATGTCAACACCTATCGTCGTTCCTTCACAACTAAATCTGGCAAAAAGGTGAGCAAGGCTCCTAAGATACAGAGACTGGTCACACCTTTGACCCTCCAAAGAAAGCGTGCAAGAATTGCACAGAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAAGCAGCTGAGTACCAGAAACTTCTCGCCTCAAGGTTGAAGGAGCAGAGGGAGCGCAGAAGCGAAAGTTTGGCCAAGAGGAGGTCCAAGCTCTCTATCGCTAAGCAATCCGTTGCAGCATAG 789 0.4854 MKVLIRNLYLQRFQLLFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAQKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSIAKQSVAA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1200 262 PANTHER 40S RIBOSOMAL PROTEIN S6 17 253 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele33g1200 262 PIRSF RPS6e 15 262 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lele33g1200 262 ProSitePatterns Ribosomal protein S6e signature. 66 77 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lele33g1200 262 Gene3D - 147 248 - -
Lele33g1200 262 MobiDBLite consensus disorder prediction 233 251 - -
Lele33g1200 262 MobiDBLite consensus disorder prediction 233 262 - -
Lele33g1200 262 Pfam Ribosomal protein S6e 17 142 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele33g1200 262 Coils Coil 203 230 - -
Lele33g1200 262 SMART Ribosomal_S6e_2 15 142 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1200 Lele-ChrLele33 22487469 22490022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1200 17 256 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.500 1.12e-116 330