Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1192 ATGGGGCTCCTTCACCGGAAGGTTCTCGAAGAAATCTGCTACGTTTATTGCAACATGAAAGATTCCTCTCCATGTTTATCCTCTGATTGCAAAGGTTGCGGCATCAAGTGCTACGTTGAGCCGCCGACTGACTACACCCCACCATCTCCTTTGGCCTTCGATGACCGTGGCTATTTCGATGATCCCCACAAAATCCACCACAAGATCTCCACCTGGTTGACCGTCGTTATCGCCGCTCTCGCCGCCGCCGTCCTCGCCCTCCTCTGCTTCGCAATCTACAAGAGATTCCTCTCCGGCCGTTTCAGGAGAAGGAGCTCGGAGACGGAGGATGATCCACGGGCAGATTTTCTCGATGAGGAAGAGGGTCCTGTGGTGGACCATCCCATATGGTATATTCGAACCCCTGGTCTTCAACAATCGATAATTTCTGCGATTACTGTGTGTAAATATAAGAAAGGGGAAGGTTTGATTGAAGGTACAGAGTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTTCATCTCCCTTGTATTGATACCTGGCTCCGATCTCACACCAACTGCCCTCTGTGCCGAGCTCCGATCGTTACCAACCCCACCACGGTCATCGCCTCGTCGGAGCCGGGGTCAAATGTTGTTGCTTTGACTGATTCAGAAGAACCCCAGATGGAGACAGTTGAAAATCGAAGTGAAAATAGTGGTGGGGTTGTGGTGGAGAACAGTGATGGTGAATTGGGAAATAGAGATGAGGAAGGAGGAGGAGGAGGAGGAGCAAGAAGAATAGAAATGGTAGATGAAGAGGAATTGGGGAATTTGCAGCCAAGAAGAAGATCTGTGTCTCTTGATTCTTCAGCTGTTGAGAAGATCAATCGTGCTCTTGCTAGAACTAATAATTCTTCATCATCTTCTTCGTCAAAGAGGGTTTCCAAAAGTGGTTCTTCTTCTTTCAGGATGAAGTCACTTCAGATTGTTGCAGGCACTTCAATGAAGAGATCTCGTTCACATTCATGGTACAGTCGAAGTCAGAGGAAGCCAAGTGTTCCTATTAGAAGCTTTTGA 1095 0.4758 MGLLHRKVLEEICYVYCNMKDSSPCLSSDCKGCGIKCYVEPPTDYTPPSPLAFDDRGYFDDPHKIHHKISTWLTVVIAALAAAVLALLCFAIYKRFLSGRFRRRSSETEDDPRADFLDEEEGPVVDHPIWYIRTPGLQQSIISAITVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPIVTNPTTVIASSEPGSNVVALTDSEEPQMETVENRSENSGGVVVENSDGELGNRDEEGGGGGGARRIEMVDEEELGNLQPRRRSVSLDSSAVEKINRALARTNNSSSSSSSKRVSKSGSSSFRMKSLQIVAGTSMKRSRSHSWYSRSQRKPSVPIRSF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1192 364 CDD RING-H2_PA-TM-RING 161 204 - -
Lele33g1192 364 SMART ring_2 162 203 IPR001841 -
Lele33g1192 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Lele33g1192 364 MobiDBLite consensus disorder prediction 255 285 - -
Lele33g1192 364 Pfam Ring finger domain 161 204 IPR001841 -
Lele33g1192 364 FunFam RING-H2 finger protein ATL54 137 210 - -
Lele33g1192 364 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 67 222 IPR044675 -
Lele33g1192 364 SUPERFAMILY RING/U-box 156 210 - -
Lele33g1192 364 MobiDBLite consensus disorder prediction 229 364 - -
Lele33g1192 364 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lele33g1192 364 MobiDBLite consensus disorder prediction 288 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1192 Lele-ChrLele33 22414345 22415439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1192 70 211 C3H Transcription Factor Family AT1G72220 55.128 2.52e-48 166