LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele33g1186	ATGGATAATAGTGGCAGCAGAGCCGAAGCCGAACGGTGGCTCTACACCGCCAATAAGCTCCTCAGCGCACGTGATCTGCACGGGGCTAGGTCTTTCGCCGTTCGAGCTCGCGAGTCCGATCCCACATTTGACGCCTCCGAGTTGCTTCTCGCCGTCATCGATACCCTCCTCGCCGGTGAGACTCAGATCAATGGCCTCCATGACTGGTATAGCATCCTCCAGATTCTGCCTTACACTCAAAACATCGAGTACATCGCTTCCCAGTATCGTCGTCTCGCTCTCCTCCTTGACCCTCACCGTAACCCTTTTGCGTTTTCTAGCCATGCGTTCACGCTCGTTCATGACGCGTGGTCCGTACTCTCTAATCCTGCTAAGAAGGCTATGTACGACAATGAGTTGCGTTTGGTCACCACCCCTCCTCCTGCGGCTCCTCCCCCGCAGCCTGTTCCCGTGGCAACCGTTCAAGCGCCGAACCCGGTTCAGGCTCTGAACTCAACTCCGACACCGAATCCACCCTCCGTCCTGCGGCAACAGCAACCGCAGCGAAGTCTGGCGAAGAGGGGCCCGAAGCCGAAAGATAGGGCGGGTGCCCGGGAACAAAGGCAAAGCCCTAACATTGCGACGACGGAGACGACCCCTCAAGCCCGGACGAGCGACCCGGTGGAGTCTGAAACGGGTTCGAGTTTCTGGACGGCGTGCCCGTACTGTTACGTTATGTATGAGTACCCGACGTTATACGAAGAGTGTACCCTTAGGTGCCAGAGCTGTAGAAGGGGATTTCATGCAGGGAAGGTACGGACGCCGCCGGTGGCCGGGAAAGATTCGTATTATTGCTGTTGGGGGTTTTTCCCGTTAGGGTTTTCAGGGGATTTCAAAGACATAAGTGGGACTAATTCCAAGTGGAACCCATTTTCTGCAATGTTTGCATGCCCTTTGAAAGGAGGAGGAGGAGGAGCTAACAGGACATCTCAGAGAGGCCCTTGGGTTTATCATGATGACGAAGCTGCTGCTGCATTCATTGAACTTTCTGATCCAAGCGGTGATGATTCGGACGATGCTGATTGGGGAGCGAGGGATGAGAGGGCTAAAAAGAGGGCTAAGATCAGAGCAAAAGCATCTGGTAATGCTAGTGGTGATGCTAGAAGGGCGTTTTCTGAAAGAACTAGGAGAGGGAGCCAGAGTGGTTCAGGACATGCCAATTTAGAAAATGGTGTGGTTGGAGACGGTGGGTCTGGTGTGCCTAATACTGCGAGAGCGGAATTGAGTAAAAAAGCTACGAATAGCTCGAGAAGAAGGGGCGCCGGGAATCTGGGGAAGTTGGATTTGAATGTGGAGTTTAGTAATGAGGTGGAAGAGCCGGCCCTGGCGGTGAGAGATGGTAATGTGGCTGGAAATCCTGAGGAGAATATAGAAGGGAATGCATTTTTTGAAGGTCTTGATGAATTCCTTAATAGTTTGCCCATTCTCAACGCCGTGGCAGATGACAAGGTTAAGGGTCACTAG	1503	0.5323	MDNSGSRAEAERWLYTANKLLSARDLHGARSFAVRARESDPTFDASELLLAVIDTLLAGETQINGLHDWYSILQILPYTQNIEYIASQYRRLALLLDPHRNPFAFSSHAFTLVHDAWSVLSNPAKKAMYDNELRLVTTPPPAAPPPQPVPVATVQAPNPVQALNSTPTPNPPSVLRQQQPQRSLAKRGPKPKDRAGAREQRQSPNIATTETTPQARTSDPVESETGSSFWTACPYCYVMYEYPTLYEECTLRCQSCRRGFHAGKVRTPPVAGKDSYYCCWGFFPLGFSGDFKDISGTNSKWNPFSAMFACPLKGGGGGANRTSQRGPWVYHDDEAAAAFIELSDPSGDDSDDADWGARDERAKKRAKIRAKASGNASGDARRAFSERTRRGSQSGSGHANLENGVVGDGGSGVPNTARAELSKKATNSSRRRGAGNLGKLDLNVEFSNEVEEPALAVRDGNVAGNPEENIEGNAFFEGLDEFLNSLPILNAVADDKVKGH	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele33g1186	500	MobiDBLite	consensus disorder prediction	159	184	-	-
	Lele33g1186	500	CDD	PHD_SF	233	278	-	-
	Lele33g1186	500	MobiDBLite	consensus disorder prediction	201	227	-	-
	Lele33g1186	500	Gene3D	DnaJ domain	65	138	IPR036869	-
	Lele33g1186	500	ProSitePatterns	Nt-dnaJ domain signature.	110	129	IPR018253	-
	Lele33g1186	500	ProSiteProfiles	dnaJ domain profile.	68	133	IPR001623	-
	Lele33g1186	500	MobiDBLite	consensus disorder prediction	360	436	-	-
	Lele33g1186	500	PANTHER	CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN	1	379	-	-
	Lele33g1186	500	SUPERFAMILY	Chaperone J-domain	61	134	IPR036869	-
	Lele33g1186	500	CDD	DnaJ	68	122	IPR001623	-
	Lele33g1186	500	SMART	dnaj_3	67	125	IPR001623	-
	Lele33g1186	500	MobiDBLite	consensus disorder prediction	159	227	-	-
	Lele33g1186	500	Pfam	DnaJ domain	68	130	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele33g1186	Lele-ChrLele33	22350467	22351969	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele33g1186	9	499	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT5G64360	39.010	5.51e-99	304