Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1175 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAACAGCGAGGCAAGTGACGTTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAAATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTCCATGACTATGCAAGCTCAAGTATGCAGCAGGTAACTCAAAGGCATGATATGTATATAGACATTCACAGATCTGATCAACCTGAGATTAATTTGCAAATTGGGAGTGAAAGCTACAACAGGCTGCGCAATGAAGTTGCAAACAAAACTCGTGAATTGAGGCATTTGAATGGGGAAGAGTTGCAAGAATTCACAATTCAAGAATTACAGAAACTAGAGGAACTGCTTGGAATGAGTTTGAAGCGCGTTTCAAAGGCAAAGGATCAACTAAATATAAAAGAGATCCGGGAACTCAAGAGAAAGGAAAAGCAACTGATGGTAGAGAACAGTGGATTGAAACAGGTAATAATACATGAAAAAGGAAGTTCCTCTGACTCAATGATTTTGTCCAGCTCACCTGATGATACTCCTCAACACCCTAATGATTTTGATACATCTCTCAAGTTGGGATTTCATTGA 618 0.3932 MTRKKIEIKKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLHDYASSSMQQVTQRHDMYIDIHRSDQPEINLQIGSESYNRLRNEVANKTRELRHLNGEELQEFTIQELQKLEELLGMSLKRVSKAKDQLNIKEIRELKRKEKQLMVENSGLKQVIIHEKGSSSDSMILSSSPDDTPQHPNDFDTSLKLGFH 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1175 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 Pfam K-box region 89 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1175 205 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Lele33g1175 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Lele33g1175 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1175 205 Coils Coil 92 112 - -
Lele33g1175 205 MobiDBLite consensus disorder prediction 176 205 - -
Lele33g1175 205 FunFam Transcription factor, MADS-box 13 82 - -
Lele33g1175 205 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Lele33g1175 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele33g1175 205 Coils Coil 148 168 - -
Lele33g1175 205 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lele33g1175 205 MobiDBLite consensus disorder prediction 176 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1175 Lele-ChrLele33 22190244 22206372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1175 1 204 MADS-box Gene Family AT2G22540 42.797 1.98e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele33g1175 K-box 1.5e-16 No_clan