Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1174 ATGACAAGACCGAAGATAGAAATAAAGAGGATCGATAACATAACAGCGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGACTTTTCAAGAAAGCTCAAGAACTCTCTACTCTCTGTGATGCTGAGATTGCTCTCATTGTCTTCTCTTCTACTGGCAAGCTCTTTGAATATGGTAGCTCAAGCGTGCAGCAGGTTATTGAAAGGCGGGCTCCTCTCTCAGGTACTGAAAGATTAGGCCATCCTTCTATAGAGTATGACAGGGACACCATCAGCATGCTCAGCAAGGAAGAAGCCAATAAGGTTCAGGAACTGAGGCAGTTGAATGGAGAAGATCTTGAAGGATTGAACGCAATTGAATTACAGAAGCTTGAACATCAATTAGAAAAAGGTTTTAGACGTGTTGTCAAAGCAAAGGATGAAATAATGTTCAAAGAGATCGATGCACTCAAGAGAAAGAGAATCCAACTGATGGAAGAGAACAAGCGATTAAAACAGGTGAGGAATGTTGCACAAGAACAAGGTCAGTCATCTGAGTCAGCCAATATTGGAAGCATATTTGATCCTCCAAATGACGATGAGAGTTCAGACACTTCTCTTAGATTGGGGTGA 609 0.4171 MTRPKIEIKRIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSSTGKLFEYGSSSVQQVIERRAPLSGTERLGHPSIEYDRDTISMLSKEEANKVQELRQLNGEDLEGLNAIELQKLEHQLEKGFRRVVKAKDEIMFKEIDALKRKRIQLMEENKRLKQVRNVAQEQGQSSESANIGSIFDPPNDDESSDTSLRLG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1174 202 MobiDBLite consensus disorder prediction 167 192 - -
Lele33g1174 202 Coils Coil 146 173 - -
Lele33g1174 202 MobiDBLite consensus disorder prediction 167 202 - -
Lele33g1174 202 Pfam K-box region 87 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1174 202 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lele33g1174 202 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Lele33g1174 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 FunFam Transcription factor, MADS-box 13 82 - -
Lele33g1174 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele33g1174 202 Coils Coil 120 140 - -
Lele33g1174 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Lele33g1174 202 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Lele33g1174 202 ProSiteProfiles K-box domain profile. 83 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1174 Lele-ChrLele33 22173832 22182539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1174 1 202 MADS-box Gene Family AT2G22540 49.787 2.22e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele33g1174 K-box 2.6e-17 No_clan