Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1172 ATGGACTATTGCGTTGGCTTTTCTCCCAGAAGGAGGAGGAGGAGAATGACGAGAAGAAAGATACAGATAAAGAAAATAGACAGCATAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAACTCTCAACTCTTTGTGATGCTGAGATTGCTCTCATAGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCCAGTATGCAACAGGTAATTGAAAGGTATGATCAACATGCAGTCATTCAAAGACTAGGCCAATCATCTGTTGATCTGCAGATTATTGAAGGTGATGAGAACAAGCTGCACAAGGTGGTAGCAGAAAGGACTCATGAGTTGAGGCAATTGAATGGGGAAGAACTTCAAGGATGCACACTTGAAGAATTGCAGAAACTAGAGGAAAGACTTGAAAGAGGCTTGTCCCTGGTTTCAAAAACTAAGGATGAAAGAATCCTCAAACAGATCAGCGCACATAAGAGAAAGGGAATCCAACTCATGGAAGAAAATCGAAGAATGAAGAAGGCACTGAGCCTTGCACCTGAACAAGGGCATTCTTCCGAGTCCATCATCATCTGCAGTTCATCTGGCAATCCTCCTCCTCCTCCTCAAGACTGTGATAGTTCTGATACATCTCTCAGGCTCGGGTTGTCGTTATTCAAATAG 687 0.4323 MDYCVGFSPRRRRRRMTRRKIQIKKIDSITARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSSTGKLFDYASSSMQQVIERYDQHAVIQRLGQSSVDLQIIEGDENKLHKVVAERTHELRQLNGEELQGCTLEELQKLEERLERGLSLVSKTKDERILKQISAHKRKGIQLMEENRRMKKALSLAPEQGHSSESIIICSSSGNPPPPPQDCDSSDTSLRLGLSLFK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1172 228 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lele33g1172 228 ProSiteProfiles K-box domain profile. 100 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1172 228 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lele33g1172 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 178 - -
Lele33g1172 228 SUPERFAMILY SRF-like 17 92 IPR036879 GO:0003677|GO:0046983
Lele33g1172 228 MobiDBLite consensus disorder prediction 195 218 - -
Lele33g1172 228 Pfam K-box region 107 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1172 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Lele33g1172 228 CDD MADS_MEF2_like 20 87 IPR033896 GO:0000977|GO:0045944
Lele33g1172 228 Coils Coil 137 157 - -
Lele33g1172 228 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Lele33g1172 228 Gene3D - 29 99 IPR036879 GO:0003677|GO:0046983
Lele33g1172 228 FunFam Transcription factor, MADS-box 28 97 - -
Lele33g1172 228 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lele33g1172 228 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lele33g1172 228 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1172 Lele-ChrLele33 22142676 22148645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1172 16 224 MADS-box Gene Family AT2G22540 48.536 4.88e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele33g1172 K-box 4.8e-14 No_clan