Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1170 ATGACGAGAAGGAAGATAGCAATAAAGAAGATAGAGAACGTAGCTGCGAGGCAAGTGGCTTTCTCTAAGAGAAGAAATGGTCTATTCAAGAAGGCCATGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCACTCTTCGTTTTCTCAGCTTCTGGTAAACTCTTTGATTATGCTAGTACAAGCATGAGGCAAGTGATTCAAAGGATAAACTTGTACTCAGATGTAAACCTCGCCAACACATACCAGCCATCTCTTGAGTTGCAGGTAGAAGGTGAATATTTTAAGCTAAACAAGGAACTGAGAGAGAAGACTCGAGAACTGAGGCAGCTCAATGGAGAAGAACTTCAAGGATTGACTATAAAAGATCTAAAGAAGCTAGAAGATCTACTTAGCACATGCTTGCATCGTGTTTCAAAAGCCAAGGCTGAAGCATTTGAGCAGGAGATCAGTATTCTTAATAAAGAGGTTCAAAGGCTTGATGAGCAAGATCAAGAGAAGTCATTGGCTACCTCTCTAACAACGAGGTTACTATTTCCTTGA 540 0.4093 MTRRKIAIKKIENVAARQVAFSKRRNGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTSMRQVIQRINLYSDVNLANTYQPSLELQVEGEYFKLNKELREKTRELRQLNGEELQGLTIKDLKKLEDLLSTCLHRVSKAKAEAFEQEISILNKEVQRLDEQDQEKSLATSLTTRLLFP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1170 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele33g1170 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele33g1170 179 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Lele33g1170 179 ProSiteProfiles K-box domain profile. 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1170 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele33g1170 179 Pfam K-box region 88 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1170 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Lele33g1170 179 Coils Coil 123 162 - -
Lele33g1170 179 Coils Coil 93 113 - -
Lele33g1170 179 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Lele33g1170 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele33g1170 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele33g1170 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele33g1170 179 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1170 Lele-ChrLele33 22090234 22113575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1170 1 173 MADS-box Gene Family AT2G22540 50.568 2.39e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele33g1170 K-box 5.2e-12 No_clan