Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1118 ATGGGTACTATGAATCCCCAGCCACTGCAAGCACGGCCTTTCGAGGGCGGAGAACTACAACTGGTGCAGGTTCCCATGCAGGTGGATGGTGTCGAAGATGGATTGAATGCTCATTGTGTCAATGGACGTCGTGACGAGGTCAGTGATGGGGTCGAAGAAGCTCGAGTGAGTTCTGGGTTATCGGGGGCAAATGGTCGTGCTTTCAAGTCTCGAACCAGTGAACTCACTATTTCGTTTGAAGGCGAGGTTTATGTTTTCCCAGCGGTTACGCCAGAAAAGGTACAGGCTGTATTGTTATTGTTGGGAGCGTGTGAGATGCCCAGCCCCTGTAGTGCTCCCAACACTGAGCTTTTGCTGCAACAGAACTATCAGAATGGAATTAATGGTACTTCCCGGGGTTCAAAACTTTCAAGAAGATTTGCATCCCTTGTTAGGTTTCGTGAAAAGCGAAAAGAGAGATGTTTTGAGAAAAAGATTCGGTACAGCTGCCGTAAAGAAGTTGCACAGAGTTAG 513 0.4815 MGTMNPQPLQARPFEGGELQLVQVPMQVDGVEDGLNAHCVNGRRDEVSDGVEEARVSSGLSGANGRAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGACEMPSPCSAPNTELLLQQNYQNGINGTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1118 170 Pfam CCT motif 139 170 IPR010402 GO:0005515
Lele33g1118 170 Pfam tify domain 71 102 IPR010399 -
Lele33g1118 170 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Lele33g1118 170 PANTHER GATA TRANSCRIPTION FACTOR 28 34 169 IPR045280 GO:0006355
Lele33g1118 170 SMART tify_2 68 103 IPR010399 -
Lele33g1118 170 ProSiteProfiles CCT domain profile. 139 170 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1118 Lele-ChrLele33 20122315 20123776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1118 18 168 Tify Gene Family AT3G21175 40.854 4.20e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele33g1118 tify 9.8e-12 No_clan