Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1117 ATGCATCGTAAGAATGGACAGTTTGCATCATCAAAGGAATGTGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAATGGCGCTGCTTGTTCAGAATCTAATGAACGTAAATGCCAGCATTGTGGAATTAATGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGGTTAATGTGGGCAAATAAGGGGACACTCAGAGTTCTCAGCAAAACAGGAAAGGTCACTTCTTTGGAACAAAATGAACTGGATACTTCAGCTGAGAGGAAGCCCTTGACGACTAAACCAGAAAACTCTTGTCCTAAGAAGAACGAGGAAGGAAGCCCCAAGGAGACAAAGCCTGAGCTGTTGGAATCCAGACAGTCACCCAAGAGGGTGAACGAGAAGTATACACTTGAAACTGCTGAAGCAGTTACTGACAATTTATCCATCCAAGTGGAGAACCTTGATGTTAATCTGCATGAGCAGGATACTCTTGAAGATCTTGCTGATGCATCTGGAACAGATTTTGAGATTCCTACAGTTTTTGATGAGCAGATTGACATTGATGATTCCAACTTGAAGACGTACTGGTTATGA 606 0.4389 MHRKNGQFASSKECDSSAAENWDSSNGAACSESNERKCQHCGINEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRVLSKTGKVTSLEQNELDTSAERKPLTTKPENSCPKKNEEGSPKETKPELLESRQSPKRVNEKYTLETAEAVTDNLSIQVENLDVNLHEQDTLEDLADASGTDFEIPTVFDEQIDIDDSNLKTYWL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1117 201 PANTHER GATA TRANSCRIPTION FACTOR 28 1 180 IPR045280 GO:0006355
Lele33g1117 201 MobiDBLite consensus disorder prediction 92 136 - -
Lele33g1117 201 MobiDBLite consensus disorder prediction 87 136 - -
Lele33g1117 201 SMART GATA_3 32 85 IPR000679 GO:0006355|GO:0043565
Lele33g1117 201 MobiDBLite consensus disorder prediction 1 37 - -
Lele33g1117 201 MobiDBLite consensus disorder prediction 10 33 - -
Lele33g1117 201 CDD ZnF_GATA 37 80 IPR000679 GO:0006355|GO:0043565
Lele33g1117 201 Gene3D - 29 91 IPR013088 GO:0006355|GO:0008270
Lele33g1117 201 Pfam GATA zinc finger 38 74 IPR000679 GO:0006355|GO:0043565
Lele33g1117 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 34 85 - -
Lele33g1117 201 ProSitePatterns GATA-type zinc finger domain. 38 65 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1117 Lele-ChrLele33 20118077 20121554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1117 1 86 Tify Gene Family AT1G51600 53.763 6.47e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele33g1117 GATA 3.7e-13 CL0167