Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g1063 ATGGGGAGAGGGAAGATTGTTATTAAGAGGATTGACGATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAGAGAGCTTTCGATCCTCTGCGACGCCCAAGTTGGCGTTGTTGTGTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAAATCTATCATTGAGCGTTACAACAAAGTAAAAGTGGAACACCATCAGCATATGAATCCTGATTTGGAAGTCAAGTTTTGGCAGAGAGAAGTGATAGTATTGAGGCAACAACTTCAACATATGCAAGAATGCCACAGGCAATCGATGGGTGCACAACTTTCTGGTTTGGGCATTGACGAACTGCAAAATCTGGAAAATCAACTGGAGATGAGTTTAAAGGGTGTCCGAATAAAAAAGAATCAAATTTTAACTGATGAGATTCAACATCTGCAACAAAAGGGAAATCAAATCCATCAAGAAAATGTACAACTATATAAAAGGATAAACCTCATTACTAAAGAAAATGTAGAACTACAGAAGATTCATGAAGCAAGGATTATGAATGAAGAAAACGGGAATTCCAATCCTCCATACAATATCAACAACAAATATGGTTTACAAGCTCCAAACCATCTGCGGCCGAACCAGCCACGACCTCAATATGCTGAATCACCAGCAAAAGCAATGGAACTGAGGTTCCTATAA 711 0.3994 MGRGKIVIKRIDDSTSRQVTFSKRRNGLLKKARELSILCDAQVGVVVFSSTGKLYEYGSSSMKSIIERYNKVKVEHHQHMNPDLEVKFWQREVIVLRQQLQHMQECHRQSMGAQLSGLGIDELQNLENQLEMSLKGVRIKKNQILTDEIQHLQQKGNQIHQENVQLYKRINLITKENVELQKIHEARIMNEENGNSNPPYNINNKYGLQAPNHLRPNQPRPQYAESPAKAMELRFL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g1063 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1063 236 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g1063 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Lele33g1063 236 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele33g1063 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele33g1063 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele33g1063 236 Coils Coil 120 140 - -
Lele33g1063 236 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Lele33g1063 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g1063 Lele-ChrLele33 18173075 18182232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g1063 1 169 MADS-box Gene Family AT4G37940 65.089 6.31e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele33g1063 K-box 5.3e-24 No_clan