Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0900 ATGCTGGTGGAGGAGGATGTTTTGCCGGACCATCTGCGCTGTAGCCGAACCGATGGCCGACAATGGCGGTGCCGCCGGAGAGTTATGGATAATCTGAAGCTATGCGAGATTCACTATCTACAAGGTCGTCATCGGCAATACAAGGAGAAGGTGCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAGAATGGGAATAATGACAGCAAGAACGACTATGTTGTTCTCGACAATGTTGAAATTAGGGCACTGGAAGTAGCGAAGAAAGCGAGACTGATAAAGAAGAGGCGTAAATTCTCGGATTCTTCTGAAGCAGTGGATGCTCATCCTGTGAAGAAAAAGGCCCTGAAACAAGGCGGTATGCAGCTGGAGTTGATAAGGATAGTTCTGAAGAGGGAGATTGAGAAGATGAAGAAGAATAAGAAGAAGCAGGGAGAGAACGAGAAGAAGAAGCCGGAAGAAGAAGAAGAAGAAGAAGAAGAGCAGATTCATTACAGCGAGGGAGAGTTGACCAGAGAATTACCCAACGGTGTTATGGCAATCTCTTCAGCATCAACGCCCCAATATTACAACAATGTGGGTTTACAATGTGATGTTAAAGTAGGGATTGATCATAAAGCAATTACCCCACGTTACTTCAGGTCCAAGAATGTGGAGAAGCTTCCTGCTGGCAAGTTGCCGGTATTGCCTTTTGGGCGAAGCTTGACGTGTAGGATGAAAAAGTGTCACTGGTGCCAGAAAAGCGATTCTTGGAATCTCATTCAATGTTCAAGCTGTCAAAAACAATTCTTTTGCATGGATTGCATCAAAGAACGGTACTTTGAAACTCAAAATGAAGTTAAGACGGCATGTCCAGTTTGTCGAGGAACATGTTCCTGTAAGGACTGCTTGGCAAGTCAGTGTAAAGACATTGAAAGTAAGGAATATTTGGCTTGTAAAAGCAGAGTTGACAGAATTTTGTGTTTCCACTATGTGATCTGCATGCTTCTTCCTGTATTAAAACAAATCAGTGAAGACCATAATAGTGAACTAGAAGCAGAAGTGAAAAGTAAAGAGAAAAGAACCTCTGATATTCAAATCAAGCAGGCTGAGTTTTGCTGTAATGAACAAAATTGCTGGATACCCAATAAATTGAAAGATGGCATTTCCGGTGAAAACCAACTTTTGGATGAGGTTATGTCCAATGGCAATTCGACTGCTACTTCATCACCAGATTGCTCAATTTCCAATGGTTCTGGAAATGTATCTTGTCCCTCCACAGAGCTTGGTGGTTGTGGTGATAGCCTCCTTGATTTGAGATGTGTTTTTCCCATAAGTTTGATAAAAGAAATGGAAACAAAAGCTGAAGAAATATCTTGCTGCTATGACTTTCCTGAATCATTGGATAAAAGTTTGAGTTGCTCGCTTTGTCTCAATTCTGATAATAAGATTGATAGATACAAACAGTGGCAAGAAGCCGCTCTAAGAGAAGATTCTGATGATAATTGCTTGTTTTATCCCCGAGTTTTGGACATCAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGAGAAAAGGCCATCCAGTTGTGGTGCGAGATGTTCTCCTAAGTAAATCAAATCACAGCTGGGATCCGCTGGTCATGTTCTGTGCTTATCTTGAGCAGAGTATCTCAAGATATCAGAATGATAAGGACTTGCTTGAAGCTTGTTTGGATTGGTGTGAGGTAGAAATTAACATTAGGCAGTATTTTTCTGGGTCTCTAAGATTTCAACCACAGAAAAATACTTGGCATGAGATGCTGAAATTGAAGGGTTGGCTGTCTTCCCAACTATTCAAAGAACAGTTTCCGACTCATTTTGCTCAAGTGATTGCTGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGCATTCTGAATTTAGCAGCAAATTTGCCACAAGGGAGTGCAAAACATGACATGGGGCCGTTTGTCTATATGTCATATGGAAGTGCTGATGAACAAGTTGATTCTGTAACAAAACTGTGTTACAACTCTTGTGATGTGGTTAATATCATGGCGCATTCAACAGATGCCCCTCTCTCTACAGAACAACTTAATAAAATAAGAAAGTTATTGAAAAAGCACCGAAATCTGTGTCAAAGGAAGTCTCCCAAAATTATTACTGAGCAAATATTGGGACAGAGTTTGGAAGAAAATTCATTATTGCATGCTGAAGACAAGGAACAAAATGGGGTGCAGAGTATGGTTAGAGAAGAAATGAATTTCTTCCGGAGAGTCAACAGAACAACATTCATCTCTACAGAGGCAGGAAATGCGGCTGGACAGAGTACGAACAGCAATATTTCTCAGGGTGGAGAATGTGATTCAGATGCAGATTCTGATTCTGATTTTGAATCCACTGTACTTCATGGGTCAGCCCAGAACACGCCATTGTCTGCGCTTGATAATCCCAGATGTTCCTGTGACAGCTCAAAGAACAATAGAAATAAAAGCCTTTCTGATCATTCTGGTGCCCAGTGGGATGTATTTCGCAGACAAGATGTTCCAAAACTAATGGAATACCTTAAAAGACATTGTACTGAATTTGCTGATACCCAGAACTACAAAAAGAAGATGATTAACCCAATTCTAGATCAGATCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTGAAATTGAACCGTGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATCCAAAGTGTTGTGTTCATGCGATACTTGAATTTGTGTCCCCTGAAAATGTTACTGAGTGCATTGAGTTGATTGACGATGTCCGTCTACCTCCCGAAGGACATAAAGCAAAAGTGGATAAGCTGGAGATGAAGAAAATGGCCCTTCATAGCATGAGAACAGCGATAAAAGAAATAGGAGATCTTACATGTAAAAAGTGA 2949 0.4117 MLVEEDVLPDHLRCSRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNGNNDSKNDYVVLDNVEIRALEVAKKARLIKKRRKFSDSSEAVDAHPVKKKALKQGGMQLELIRIVLKREIEKMKKNKKKQGENEKKKPEEEEEEEEEQIHYSEGELTRELPNGVMAISSASTPQYYNNVGLQCDVKVGIDHKAITPRYFRSKNVEKLPAGKLPVLPFGRSLTCRMKKCHWCQKSDSWNLIQCSSCQKQFFCMDCIKERYFETQNEVKTACPVCRGTCSCKDCLASQCKDIESKEYLACKSRVDRILCFHYVICMLLPVLKQISEDHNSELEAEVKSKEKRTSDIQIKQAEFCCNEQNCWIPNKLKDGISGENQLLDEVMSNGNSTATSSPDCSISNGSGNVSCPSTELGGCGDSLLDLRCVFPISLIKEMETKAEEISCCYDFPESLDKSLSCSLCLNSDNKIDRYKQWQEAALREDSDDNCLFYPRVLDISRDNFEHFQKHWRKGHPVVVRDVLLSKSNHSWDPLVMFCAYLEQSISRYQNDKDLLEACLDWCEVEINIRQYFSGSLRFQPQKNTWHEMLKLKGWLSSQLFKEQFPTHFAQVIAALPLQEYMNPMSGILNLAANLPQGSAKHDMGPFVYMSYGSADEQVDSVTKLCYNSCDVVNIMAHSTDAPLSTEQLNKIRKLLKKHRNLCQRKSPKIITEQILGQSLEENSLLHAEDKEQNGVQSMVREEMNFFRRVNRTTFISTEAGNAAGQSTNSNISQGGECDSDADSDSDFESTVLHGSAQNTPLSALDNPRCSCDSSKNNRNKSLSDHSGAQWDVFRRQDVPKLMEYLKRHCTEFADTQNYKKKMINPILDQIFFLDNTHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNPKCCVHAILEFVSPENVTECIELIDDVRLPPEGHKAKVDKLEMKKMALHSMRTAIKEIGDLTCKK 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0900 982 Pfam JmjC domain, hydroxylase 830 923 IPR003347 -
Lele33g0900 982 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Lele33g0900 982 MobiDBLite consensus disorder prediction 762 829 - -
Lele33g0900 982 Pfam WRC 9 50 IPR014977 -
Lele33g0900 982 Gene3D Cupin 500 954 - -
Lele33g0900 982 Coils Coil 126 161 - -
Lele33g0900 982 MobiDBLite consensus disorder prediction 136 150 - -
Lele33g0900 982 MobiDBLite consensus disorder prediction 793 829 - -
Lele33g0900 982 SUPERFAMILY Clavaminate synthase-like 498 970 - -
Lele33g0900 982 SMART cupin_9 609 945 IPR003347 -
Lele33g0900 982 ProSiteProfiles JmjC domain profile. 628 945 IPR003347 -
Lele33g0900 982 ProSiteProfiles Zinc finger RING-type profile. 241 287 IPR001841 -
Lele33g0900 982 Coils Coil 333 360 - -
Lele33g0900 982 MobiDBLite consensus disorder prediction 762 783 - -
Lele33g0900 982 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 396 981 IPR045109 GO:0032454|GO:0033169
Lele33g0900 982 MobiDBLite consensus disorder prediction 136 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0900 Lele-ChrLele33 9320987 9326151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0900 9 48 GRF Transcription Factor Family AT2G22840 50.000 2.21e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele33g0900 JmjC 1.3e-09 CL0029