Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0849 ATGGATGAGGGAAAGCGTAAATCTAGGAAGGAAGATTATGAAGGAAAGGAAGAGGATTACAAGAGGAGCCGCCGTGAACGAGATCATGTGAAGACTAGTGATAAAGGTAAGGATAGAAGCGAAGGGAGGCATAGAGATAGAGAGAAGAAGGATCGTGGGAGTCGACGCTATGAGAGAGAGAAAAGCAGCGAATCTGATGAAGGATTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAAGGATAGGACACGAGTTCATGATGAAGAAAGAGAAAGAACTCGAGACAAGAAAAGGGAAAGAGATAGGGAATATAGGGAAAGGGAGAGGAGAGATAGGAAGGAGAAAGAAAGGGAGAAGCATAGAGAAAGGGAACGGGATAGGAGAGAGCGTGAAAGGGAGAAGGAAGTGGAAAGAGACAGGGGGAGGAGAGTTAGAGAGAGAGAGAAGCATAGGGATTTTGATAGTGAGTATAGTGATGATGATTCCAGGGATAGAGAAAGAAAGCGGCACAAGAGAGATGATGATGATTACAATGTTAGAGAGCAGGAGAAGAGTGTTAGCAAGTCAAGCAGGAAAAATGAGAATATTGAGGGGAGCCCAATAAAAAAGAGTGGCAATGGTAACTCATATGCCCATGAAAGCAAACCTAGTCGTGGGGAGGAGTTAGAGGATGAACATAAGAGGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAATGGCAAGAGCTAAGGAGGAAGAGGGAAGAAGTTGAGAGAGAAAAGCACGGTGAAGCAAGTGCTGATGAAGCCAAGTCTGGAAAGGCCTGGACACTTGAAGGGGAGTCTGATGATGAAGATGGAACCACTGCAGGGAAGCCAAATACAGCTATGGATGTAGATGAAGATGACAAACCTTTGGATAATGAACCTAAGGATTCTATGTCAGTAGATATTAGTAATGGGCCTGATACATCAAATTTACCGGATGAAGCTGATGGTTCTCATGTAGATGAGGACATTGATCCATTGGATGCTTACATGAGTACTATGGTTTTGCCTGAAGTTGAAAAGCTGAATAGTGATGTGGCTACTGAATCTTCTAATCAAACAGCTGACTTAAAGCCCAAGAGTAACAATGATGAGCAAAGTAATGGCGGTAACCCATGGAAAGGTGCAAATAAATCACTTGGGAGAATAATTCCTGGTGAAGAGTCTGAGTCAGATTATGAAGACCTTGAAATTGAGGGGGATCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTCAAGAAGACCAAAGCTGAGAAACTTTCTATTGTTGACCACTCAAAGATTGATTATCAGCCATTCAAGAAAAATTTTTATATCGAAGTAAAGGAGATTGCTAAGATGACTCCTGAAGAAGTTGCAGCATACAGGAAGGAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGAATCAGATTGGACTTACTAGCAAAATTTTGGAGATCATAAAGAAGCTTAATTATGAAAAGCCAATGGCTATTCAAGCTCAGGCCCTCCCTGTAATTATGAGTGGTAGAGATTGCATAGGAATTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTGCCAATGCTGAGGCACATCAAGGATCAACCACCAGTTGTTTCAGGAGATGGGCCGATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAATTTGCCAAAGTACTTGGTATAAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTGGTGGAAAGATTACTAACCTGTGTAGAGTCACTTATCTGGTCATGGATGAAGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAAGTGTTCTCTTTTCTGCTACTTTTCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTGGTAGAGGTGAGGCCAGAAAATGAAAGGTTCTTAAGGCTCTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGGTATTTGTCCACTCCCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGATCGGGAATCCACAATCTCTGACTTCAAAAGCAATGTCTGCAGTTTGTTGATTGCAACTAGTGTTGCTGCCAGGGGTTTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACACCGTGTTGGACGTACAGGCCGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCGGAGGAAGAAGCTAGATATGCACCAGATATGGTTAAAGCTTTGGAGCTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGATTTATGACAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGAACCGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCTAATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCAGGAGGCGATACCTCACAGCATCATGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCTGCAATGCCCTCTACTTCTCAGGTTATTTCAAATGGTGGACTGCCTGTTTCTTTGCCTGCTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCTGCTGCCCCAAGTGATGGAGCAACTCGGGCAGCATTGGCTGCTATGAACCTGCAAAATAAATTAGCAAAGATTTCCGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCAATTTCCGAGTGGACTGGAGCTGCTATTACAACCAGGGGGCAGTATTACCCACCTGGCAGGGTCCCAGGACCTGGTGAACGGAAACTCTACTTGTTCATTGAGGGCCCCAGTGAACAGTCTGTCAAGAGAGCAAAAGCAGAATTGAAGCGTGTGCTCGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGGGCTCAACCAGGCAAATACTCTGTTGTATAA 3372 0.4345 MDEGKRKSRKEDYEGKEEDYKRSRRERDHVKTSDKGKDRSEGRHRDREKKDRGSRRYEREKSSESDEGFDREREKHRDKDKDRTRVHDEERERTRDKKRERDREYRERERRDRKEKEREKHRERERDRREREREKEVERDRGRRVREREKHRDFDSEYSDDDSRDRERKRHKRDDDDYNVREQEKSVSKSSRKNENIEGSPIKKSGNGNSYAHESKPSRGEELEDEHKRLDEEMEKRRRRVQEWQELRRKREEVEREKHGEASADEAKSGKAWTLEGESDDEDGTTAGKPNTAMDVDEDDKPLDNEPKDSMSVDISNGPDTSNLPDEADGSHVDEDIDPLDAYMSTMVLPEVEKLNSDVATESSNQTADLKPKSNNDEQSNGGNPWKGANKSLGRIIPGEESESDYEDLEIEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFKKNFYIEVKEIAKMTPEEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILEIIKKLNYEKPMAIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVSGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLCRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQSVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCSLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDMVKALELSEQIVPDDLKALADGFMTKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSNSEDEDEGIRKAGGDTSQHHALAQILVAATKANTPAMPSTSQVISNGGLPVSLPAVLGLQTAGVMPGTGLPAAPSDGATRAALAAMNLQNKLAKISGAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYYPPGRVPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0849 1123 MobiDBLite consensus disorder prediction 904 937 - -
Lele33g0849 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 869 IPR027417 -
Lele33g0849 1123 Pfam DEAD/DEAH box helicase 513 684 IPR011545 GO:0003676|GO:0005524
Lele33g0849 1123 CDD SF2_C_DEAD 709 839 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 310 324 - -
Lele33g0849 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 847 IPR027417 -
Lele33g0849 1123 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 869 IPR001650 -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 357 387 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 293 308 - -
Lele33g0849 1123 PANTHER RNA HELICASE 432 910 - -
Lele33g0849 1123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 519 697 IPR014001 -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 403 418 - -
Lele33g0849 1123 Coils Coil 220 257 - -
Lele33g0849 1123 SMART ultradead3 507 712 IPR014001 -
Lele33g0849 1123 FunFam probable ATP-dependent RNA helicase DDX17 450 700 - -
Lele33g0849 1123 Pfam Helicase conserved C-terminal domain 722 830 IPR001650 -
Lele33g0849 1123 Gene3D - 699 872 IPR027417 -
Lele33g0849 1123 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 488 516 IPR014014 GO:0003724
Lele33g0849 1123 CDD DEADc_DDX46 477 698 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 399 418 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 904 935 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 200 214 - -
Lele33g0849 1123 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 643 651 IPR000629 -
Lele33g0849 1123 Gene3D - 440 698 IPR027417 -
Lele33g0849 1123 SMART helicmild6 749 830 IPR001650 -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 215 285 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 1 337 - -
Lele33g0849 1123 Coils Coil 1087 1110 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 1 199 - -
Lele33g0849 1123 Coils Coil 106 134 - -
Lele33g0849 1123 MobiDBLite consensus disorder prediction 354 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0849 Lele-ChrLele33 7984032 7987403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0849 475 850 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 1.46e-57 202