Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0801 ATGTCAGTCTTCGCTTCTTCAGATAGTCACTGCTACGGCCCTGACGCCGATGCCATTACGTCCAGTAAGCCCGATGAGGGTCAGAAAGTGACTTCCACGTACCTTTGGAATACCTTATTTGGTATTTTGAATGAACATTGGGTATATTCCAGGCCATTGGAGCAGTTTCTCCTGATTCATCTCAAAGGCTTTTGCTACAAGAAAGAGAACACAATTGTGTTAGGCCATGTGCACCTTATTGTTACCGTTTTCTTTTTCTTTTTCAAAAAAGATTTGAGTTCAGCTATGAGGTCTCTGAATCCAGAAAGGAATTTGATATCAGTTTCACCTGCGGTAAGAAACCTTGAAGTGACATCACCATCTTATTTGCCTCTTATGGAAGGGAATGCAGCCAAGGCTAAAGTTTCTGTTCCTTCATACAATGTACCTACAATTAGAAAGAAAGATTTTCAACCGAAATGTAAACTTTCAAGTAGGCCAGAATCAAGAAAAAATCAGGATTTGGAAGATGACAAAAATCAAGGATTAGAAACTGATGTTGAAAATGCTGGATCCCTTTTACAACGGAAAACCTTTGGAGGATATAGTGAACCATGTTGCCATTACACTTCAGATTTTGGAAAAGATGGGACTATTAACCTCCGGGGCGATCGCATTGTTGAGAAGGCTAGTGGTGATCAAAATCATATAAAGCATATCAGGCAGTTGAGCATGCGATCGGGAGATGCTATGAGCCCAACAACATCAAGGCATCCTTCTCCCGACTTGAGGACCAGAGATATGTCTCCCTGTGCTGAGATTAAAGTTGGAAACAGGTGTCATGCTAACATATGTGCTTTTTATGCCAAAGGATGGTGCATCAGGGGTAATTCTTGTAGGTTTATTCATATAAAAGATCTTGAAAATAAATCAGACCAGCAGACTGAAGGAGAATTGGTTACTCAAAATTGGAAGAGAGAGGCGCAACCAGATGAAGGTATTGGAGATGATGTTAAGAGATCAAGGATGCCTTGTACTCAAGTTCCATTGGCTGCTACACAAGAAAGAACATCTCTGTATTCATCTGAATTTTCCTTCAACCCAATAATCCAGAAAGAAGTAGGCCCAAGCTGGCATCCAGACAAAAGTTGGTCTGTCTCTTCTTTCCCTTCCTGTCTAACCCATACAGAGGGAATGACTACCACTCAAGTGGAGAGTCATTCGCCTAATTTAAGCATAGCTACTCATCTTCCAACTACATGTATGTCACTATACAACCATATTCCTTCCCGATCAGCATGTTCATTTTCTTTTAGTGGATCCTTAAGTGAAAGTTCTATAGATTCTCAACAACTTTTGGACAGTGGCATGGCATATCATGACAGCAGATCCACTTTCTCTGGTTCAGAAAAGGAAGGTTTGGCTCCAAGTAGTTCATTTGGGGTTTCACCACACCCAACTGGATGTAAATTAAAATTCTCTTCATATGATTGGGAGCCATCTGTACCTTTCAAACCATCTGTTTTGTTTACTGCTTCAAGTAGATCATCTGTAGAAGATCAAAAAGACCCTTTTCACAATAGTGTGGAGATATCCAATATAGGAGATGGATCCTTGAAAGCTTTCATTTTATCTCATAGGTCATCCATTCAGACTTCATCTCAGGTTCCTACAAATGGCGAGTCTGTTGAAGCTGCAAATCAGGGATTAGATCTTCATGGTGCCAAAAGTTCTGTATCTCCTCATAATAGATGTAATAAAACTGAGCCAGAGGTGAGTTTTGTTCCTCATGAAAAAAGTTTTGTTACAACTGAAACAGATAGAGTAGTAGCAAGACATCTAAATTGCCAATTTGGAAGGGTTGGCATGGGACTCAATAATTTTGAAGATGTTAAAAATATAGGAAAAGAACAAACTGAGCGTGATGCTAGACCTCAAGTTGAAGTAACCGAGTACAAAAAACAAAGAGTAGGTAGGGATGAGAAAAACAGCGAAATGGATAATAATCTTCAGAAGGATGTTGGTGTGCAGATAGAATCAATGGAACTAAGACATTTCCGTTTTGCGCTTGTTGATCATGTGAAAGAGATTTTAAGACCAGTTTGGCTCAAGGGTTGCCTCAGCAAGGATGCACATAACATGATTGTTAAAAAATCAGTTGACAAGATTATTAGAACCTTACAGCCTGAGCAAATTCCATCAAATGAGGATTCTGTCAAGAAGTACCTTTCTTTTTGTCAGGTGAAAATTGCAAATCTGGTCAAGGATTATACCAGTATATATGGCAAGGTGACAGAGGGATCTTTTGTCATCATCATAGCAGATTGTGTTAGATCATTCAATGGGACTGATCTGGCTTTTATGGGTTTGGGTTAG 2355 0.3962 MSVFASSDSHCYGPDADAITSSKPDEGQKVTSTYLWNTLFGILNEHWVYSRPLEQFLLIHLKGFCYKKENTIVLGHVHLIVTVFFFFFKKDLSSAMRSLNPERNLISVSPAVRNLEVTSPSYLPLMEGNAAKAKVSVPSYNVPTIRKKDFQPKCKLSSRPESRKNQDLEDDKNQGLETDVENAGSLLQRKTFGGYSEPCCHYTSDFGKDGTINLRGDRIVEKASGDQNHIKHIRQLSMRSGDAMSPTTSRHPSPDLRTRDMSPCAEIKVGNRCHANICAFYAKGWCIRGNSCRFIHIKDLENKSDQQTEGELVTQNWKREAQPDEGIGDDVKRSRMPCTQVPLAATQERTSLYSSEFSFNPIIQKEVGPSWHPDKSWSVSSFPSCLTHTEGMTTTQVESHSPNLSIATHLPTTCMSLYNHIPSRSACSFSFSGSLSESSIDSQQLLDSGMAYHDSRSTFSGSEKEGLAPSSSFGVSPHPTGCKLKFSSYDWEPSVPFKPSVLFTASSRSSVEDQKDPFHNSVEISNIGDGSLKAFILSHRSSIQTSSQVPTNGESVEAANQGLDLHGAKSSVSPHNRCNKTEPEVSFVPHEKSFVTTETDRVVARHLNCQFGRVGMGLNNFEDVKNIGKEQTERDARPQVEVTEYKKQRVGRDEKNSEMDNNLQKDVGVQIESMELRHFRFALVDHVKEILRPVWLKGCLSKDAHNMIVKKSVDKIIRTLQPEQIPSNEDSVKKYLSFCQVKIANLVKDYTSIYGKVTEGSFVIIIADCVRSFNGTDLAFMGLG 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0801 784 Gene3D - 271 324 - -
Lele33g0801 784 SUPERFAMILY CCCH zinc finger 274 296 IPR036855 GO:0046872
Lele33g0801 784 MobiDBLite consensus disorder prediction 151 177 - -
Lele33g0801 784 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 296 IPR000571 GO:0046872
Lele33g0801 784 MobiDBLite consensus disorder prediction 151 182 - -
Lele33g0801 784 MobiDBLite consensus disorder prediction 456 476 - -
Lele33g0801 784 MobiDBLite consensus disorder prediction 237 259 - -
Lele33g0801 784 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 223 755 - -
Lele33g0801 784 ProSiteProfiles Zinc finger C3H1-type profile. 272 299 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0801 Lele-ChrLele33 7221208 7226207 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele33g0801 zf-CCCH 2e-05 CL0537