LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele33g0756	ATGGAGGAGTCCTCATCGGAGTCCAAGGATCCAAATTCGAATTACCAGATTAACCAGAAAATTAGTCATCATCATCATGCAGCTGCAGATTCAGAAGCGATTCTTGAGAACATATGGGCTAGAGTTATAAGCAGTAATAATGGTGGAATAACAAGAGAAAATGCATGGGAAGGGCTTCCAAATCTTGAAGGAAGAGACAAATCTATGGAGATTCTACAAAGGCTTCCAAGTTTGGGAAGATGGATATCAATGGGAGCTGAGGCATGGGAAGAGATTTTAGCTGATTTTCCACAAAACCTTCTTCTTCAAGACAATCTGGGAATTTGCAGGAACATTCATGAATCCAACTGTAAAAAGGTAGAACAACAAGAAGAGAAAGAAGAAGGTGGCGGTAGTGTTGTGAGGGCAAAGAATAATAATAAGGGCGGTGAAAGTAGAAGACACTACAGAGGAGTGAGAAGAAGGCCATGGGGGAAATATGCAGCAGAAATAAGGGACTCATCAAGAAATGGAGCCAGGGTTTGGCTTGGGACATTTGAGACAGCTGAAGAAGCTGCTTTAGCTTATGATAAAGCAGCTTTGAGAATTAGAGGTCCTAAGGCTTACTTGAATTTCCCAATTGAAACTGTTGCAAATGCTTTAGCGTTTGACCTCAAGGCTTCTTCTTCAACTAATTGTGAGGAGGATTATTCTGAAAGTTGCAGCACTAATTCCAGGAAAAGAAGATTGAGAAATATTATTGAAGAACCTGAAGCTAAAAAGATGGTGACTTTGGGGAATGAAGTAGATGTTGTTGTGTTTCAGGAATTGGGGAATGATTACTTGGAGAGTTTGTTATCTTCCTTTTGA	849	0.4016	MEESSSESKDPNSNYQINQKISHHHHAAADSEAILENIWARVISSNNGGITRENAWEGLPNLEGRDKSMEILQRLPSLGRWISMGAEAWEEILADFPQNLLLQDNLGICRNIHESNCKKVEQQEEKEEGGGSVVRAKNNNKGGESRRHYRGVRRRPWGKYAAEIRDSSRNGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPIETVANALAFDLKASSSTNCEEDYSESCSTNSRKRRLRNIIEEPEAKKMVTLGNEVDVVVFQELGNDYLESLLSSF	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele33g0756	282	Gene3D	AP2/ERF domain	147	208	IPR036955	GO:0003700\|GO:0006355
	Lele33g0756	282	ProSiteProfiles	AP2/ERF domain profile.	148	206	IPR001471	GO:0003700\|GO:0006355
	Lele33g0756	282	Pfam	AP2 domain	148	198	IPR001471	GO:0003700\|GO:0006355
	Lele33g0756	282	PRINTS	Ethylene responsive element binding protein signature	149	160	IPR001471	GO:0003700\|GO:0006355
	Lele33g0756	282	PRINTS	Ethylene responsive element binding protein signature	172	188	IPR001471	GO:0003700\|GO:0006355
	Lele33g0756	282	CDD	AP2	156	207	IPR001471	GO:0003700\|GO:0006355
	Lele33g0756	282	FunFam	Ethylene-responsive transcription factor 2	147	208	-	-
	Lele33g0756	282	SMART	rav1_2	148	212	IPR001471	GO:0003700\|GO:0006355
	Lele33g0756	282	PANTHER	DNA-BINDING DOMAIN	121	276	IPR044808	GO:0003700\|GO:0009873
	Lele33g0756	282	SUPERFAMILY	DNA-binding domain	148	208	IPR016177	GO:0003677
	Lele33g0756	282	MobiDBLite	consensus disorder prediction	121	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele33g0756	Lele-ChrLele33	6780955	6781803	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele33g0756	34	282	AP2-EREBP Transcription Factor Family	AT4G18450	34.251	2.20e-37	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele33g0756		AP2	2.4e-15	CL0081