Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0647 ATGCTTGATCATCAAGAAAACAACATGGCAATATCAACCGAAGCTAATAAGAACATCAAGGCTAGAAAGAAATCATCATCCAGAGGGCATCCTCAGTTCGTCGGAGTTCGTCAAAGGCCGTCGGGACGGTGGGTGGCTGAAATCAAAGACTCCCTTCAGAAGGTTCGGCTTTGGCTCGGAACATTCGACACAGCCGAGGATGCTGCTCGTGCCTATGACGCAGCCGCACGCGCTTTGCGTGGCGCCAACGCTCGCACCAACTTCGACTTGCCGGATCCTGGAGGCGGCGGTGGGGGCGCTACCACCCAACACGGTGGTAGTAGTTTCAGCTACATGCCGGATAATCTTGAGCCGTTCTCGTTTGAGGACACATGTATGGGATCAGATCATCATGACCTCCTTGGAGCACTCAAGGACAAGCTGTTTGATGACAATGGAGGAGTAGTGAGATTTCCTTCTCAATTATCATCCAATAATAGCCAAATCTTGACAGGTTTTTTAAACCCTAATAATAATAATCCAGGGTTTGCAAGCATGTCTTCATCAAGAACAAGCATGAGTGCGCCTAAGAGCACTCACACCAATAATAATAACAATAGTAATATGCTCAACTCAGAGCATCACGACCATGGAGGTTCTATAGCAGCTGCAAATAATAATTCCTCTACGGAGCCCTTAGTGACTACTTCATGGTCCAATAACAACGAGATAGGTAATTGTGAATTGCCTAATTGGACTACAGGTCCTACACAGATCACGAACCAGGTGGTTCCTGAAAATAATAATAGCTTGTTTGTATCTTCAAGTAATTCTCCATGGCCAACACTATCTGGGTTTCACGTTATTGAGCCTACGCTGAATATGATGTATTCAGATGTTGTCAACCTTGTTCACATCGACCAGAGAGAACATGATTCAGATAGAGCAGTCTTAGGATATTCTGATTGTAATAATAATCAACATATGATGTTTTCTGAGAATCAAATTGGGCCTTCAGGTAGCAGAAGTAATATTGCTCAAATTGGAGTACTACACGAAGGGTTTTGGACAAGTACAGAGCAGCTGCAAGTTCTTGTGCAGAGTGACAACAATGGCTGTTGGTTTAGTTCGAATAATAATAATAATAATAATGGTACGTGGGATCCTTTGCTTTTTGTGTCGTCAGAATTAGGCTGA 1176 0.4388 MLDHQENNMAISTEANKNIKARKKSSSRGHPQFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDAAARALRGANARTNFDLPDPGGGGGGATTQHGGSSFSYMPDNLEPFSFEDTCMGSDHHDLLGALKDKLFDDNGGVVRFPSQLSSNNSQILTGFLNPNNNNPGFASMSSSRTSMSAPKSTHTNNNNNSNMLNSEHHDHGGSIAAANNNSSTEPLVTTSWSNNNEIGNCELPNWTTGPTQITNQVVPENNNSLFVSSSNSPWPTLSGFHVIEPTLNMMYSDVVNLVHIDQREHDSDRAVLGYSDCNNNQHMMFSENQIGPSGSRSNIAQIGVLHEGFWTSTEQLQVLVQSDNNGCWFSSNNNNNNNGTWDPLLFVSSELG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0647 391 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Lele33g0647 391 MobiDBLite consensus disorder prediction 173 229 - -
Lele33g0647 391 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 215 - -
Lele33g0647 391 MobiDBLite consensus disorder prediction 214 229 - -
Lele33g0647 391 MobiDBLite consensus disorder prediction 86 108 - -
Lele33g0647 391 MobiDBLite consensus disorder prediction 173 207 - -
Lele33g0647 391 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lele33g0647 391 MobiDBLite consensus disorder prediction 18 39 - -
Lele33g0647 391 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lele33g0647 391 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Lele33g0647 391 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Lele33g0647 391 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lele33g0647 391 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lele33g0647 391 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lele33g0647 391 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0647 Lele-ChrLele33 4788788 4789963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0647 20 88 AP2-EREBP Transcription Factor Family AT5G19790 68.571 5.83e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele33g0647 AP2 6e-14 CL0081