Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0620 ATGGCAGAGGCGTCTGCAGCGAACGGAACCCACGAGGTTGTTCTGAACATCAACGACAAATCCAATGAAGATTCCAGCATCTCCATCTCCGTCCCTTTCTTGCAGAAGGTCCCTCCTTCTCCTTCTCTATCTAAATTGGTGGCAGAATTGGCGGGGACATACTTTCTGATATTTGCCGGCGAAGCGGCGGTGATGGTGGACAAGGGGTACGACAACCAAGTAACACATCCTGGGATTTCCATAGTTTGGGGTCTTGTGGTTATGGTTCTTGCCTATTCCCTTGGTCACATCTCTGGTGCTCATTTCAATCCTTCTGTCACCATCGCTTTCGCTTCTACCAAACGTTTTCCCCTCAAACAGGTACCAGCTTATGTATTAGTTCAGGTTCTGGGATCGACGCTTGCGAGTGGGACTCTGAGACTTATATTTGAAGGAAGCAGAGACCAGTTCGCAGGAACGGTAGTTTCTGGGACGAATCTTCAAGGTTTTGTGGTCGAGTTCATCATCACCTTCTTCCTCATGTTCGTCATTTCTGGTGTCGCCACCGATAACAGAGCGATCGGTGAGCTGGCTGGTCTTGCGATAGGGGCTACGGTGTTGCTTAATGTCATGTTTGCTGGGCCGGTGACCGGAGCTTCGATGAGTCTGGCGAGAAGCTTAGGTCCAGCGATAGTGTGGCATGAATACAAAGGAATATGGGTATACATGACAGCTCCGGTGGCCGGAGCAGTGGCGGGAGCATGGGTGTATAATATCATAAGGCACACAGACAAGGCAACATGA 783 0.5006 MAEASAANGTHEVVLNINDKSNEDSSISISVPFLQKVPPSPSLSKLVAELAGTYFLIFAGEAAVMVDKGYDNQVTHPGISIVWGLVVMVLAYSLGHISGAHFNPSVTIAFASTKRFPLKQVPAYVLVQVLGSTLASGTLRLIFEGSRDQFAGTVVSGTNLQGFVVEFIITFFLMFVISGVATDNRAIGELAGLAIGATVLLNVMFAGPVTGASMSLARSLGPAIVWHEYKGIWVYMTAPVAGAVAGAWVYNIIRHTDKAT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0620 260 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 SUPERFAMILY Aquaporin-like 43 255 IPR023271 -
Lele33g0620 260 Pfam Major intrinsic protein 42 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 CDD MIP 45 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Lele33g0620 260 TIGRFAM MIP: MIP family channel proteins 48 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele33g0620 260 PANTHER AQUAPORIN NIP2-1 23 258 IPR034294 -
Lele33g0620 260 Gene3D Glycerol uptake facilitator protein. 6 260 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0620 Lele-ChrLele33 4598197 4599775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0620 21 207 Major Intrinsic Protein MIP AT4G18910 69.072 9.99e-87 256