Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0595 ATGTTGCTATTAAGATATGTATTAGATCAAGTTGAGTCCCAAGATTTAGTAGCTGAATATGTAGTTCTGCAAAATGTTGAAGACTTATCTCTCTTGTTTCTGATAGAAGAAGGAAAAGAATTTCCCAGTTCCCTGAGAACTTTGTTGCTGCTTGTAACTCTTTTATCGCTTTTGTGTGTTTTCCTTCCCCAGCTCATAAATCCAGGGTTTAATTTCATTAGTCATGGCTTTTACTTCTCAAAAATCGATTCTTTTCTTCTGTTTGAGAGATTGATTTCTGCAGCCATGGCGTTCCCAAATAATAATCAAGCCATCTCGGATTCTTCATCTCCACAGAGAAAGATGGGGAGAGGGAAGATAGAGATAAAGAGGATCGAGAACACAGCAAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTGTCTGTGCTTTGTGATGCTGAAGTCGCTCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAGGCAACAATAGAGAGGTACAAGAAAGCATGCTCAGATTCTTCTGGTGCTGGATCCACTTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCTGCGAAACTGCGGGCTCAAATTAGTAACATGCGCAATAACAACAGGCAAATGATGGGGGAGACTTTGGCAGGTATGAGTGCTAGAGATCTCAAGAACTTGGAGGGTAAGTTAGAGAGAGGCATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTCTTTGCTGAAATTGACTACATGCAGAAGAGGGAAGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTACGATAGCAGAAAGTGAGAGAAACCAGCAGCAGCAAAACATGAATGTGATGCCAGGAGGTGGAGGGTCATCAAACTATGAAGCGATGCAGTCTCCAAATGAGCCTACTCATCAATATGACTCACGAGGCTTCTTCCAAGTCACTGGTTTACAACCTACTCATCACTACGCTCCCCAAGACCACATCTCCCTCCAATTAGTGTGA 1053 0.4283 MLLLRYVLDQVESQDLVAEYVVLQNVEDLSLLFLIEEGKEFPSSLRTLLLLVTLLSLLCVFLPQLINPGFNFISHGFYFSKIDSFLLFERLISAAMAFPNNNQAISDSSSPQRKMGRGKIEIKRIENTANRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEANAQYYQQEAAKLRAQISNMRNNNRQMMGETLAGMSARDLKNLEGKLERGISRIRSKKNELLFAEIDYMQKREVDLHNNNQLLRATIAESERNQQQQNMNVMPGGGGSSNYEAMQSPNEPTHQYDSRGFFQVTGLQPTHHYAPQDHISLQLV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0595 350 FunFam agamous-like MADS-box protein AGL11 127 210 - -
Lele33g0595 350 Pfam K-box region 197 285 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g0595 350 Gene3D - 127 193 IPR036879 GO:0003677|GO:0046983
Lele33g0595 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 115 295 - -
Lele33g0595 350 SUPERFAMILY SRF-like 116 187 IPR036879 GO:0003677|GO:0046983
Lele33g0595 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 124 171 IPR002100 GO:0003677|GO:0046983
Lele33g0595 350 Coils Coil 201 228 - -
Lele33g0595 350 PRINTS MADS domain signature 117 137 IPR002100 GO:0003677|GO:0046983
Lele33g0595 350 PRINTS MADS domain signature 152 173 IPR002100 GO:0003677|GO:0046983
Lele33g0595 350 PRINTS MADS domain signature 137 152 IPR002100 GO:0003677|GO:0046983
Lele33g0595 350 Coils Coil 238 258 - -
Lele33g0595 350 SMART madsneu2 115 174 IPR002100 GO:0003677|GO:0046983
Lele33g0595 350 ProSiteProfiles K-box domain profile. 201 291 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele33g0595 350 CDD MADS_MEF2_like 116 190 IPR033896 GO:0000977|GO:0045944
Lele33g0595 350 ProSiteProfiles MADS-box domain profile. 115 175 IPR002100 GO:0003677|GO:0046983
Lele33g0595 350 ProSitePatterns MADS-box domain signature. 117 171 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0595 Lele-ChrLele33 4266742 4273528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0595 106 350 MADS-box Gene Family AT3G58780 61.382 1.39e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele33g0595 K-box 3.8e-26 No_clan