Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0577 ATGATGAGCAAAGGAAGCAGAGAGTTAGAGAAGGACGCGACTTCGTCTTCTTCTTCCTTTTCAGATTCACCTGCGAGTAACATGAAGGCGAGTGCTAGAATTTCCGATAAAGACAAAGCAATTGCTCAGTATAGTGCTGACGCAGGGATTTTGGCTGAGTATGAGCAATCTGGTGTGTCGGGCAAGTCGTTCGATTACTCGAGGTCGGTTCTTGATGCTCCGAAATCCGTGTCGGACGAGAAAATGACGGCTTACTTGTTGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGTTGTATGCTTGCGATTGAAGAACCCACTTTTCGTATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGGTTTAAACGGAAAATCTCATACAAAACGATTTGTTAGTCTGATTGGAGTTGATGCTACTACTCTATTCACGCCTTCTTCTGGGACTTCCCTTGCAAAAGCTGCGGCGTCGAGGGAAATTTCGCTTCTGAATCCGATTTGGGTCTGTTCCAGAACAACCCAGAAGCCTTTTTATGCTATAATGCATCGAATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCATGCATTGTCACTTGCTGGCGCCATGCAGTCTCAGAAACTAGCCGTACGGGCAATTTCAAGGCTGCAATCTCTTCCTGGGGGAGATATTGGAGCTTTGTGTGATACTGTTGTTGAAGAAGTTCAAAAGCTCACTGGATATGACAGGGTTATGGTATATAAGTTCCATAAGGATGACCATGGGGAGGTTGTGTCTGAAATCAGAAGATCAGATTTAGATCCCTTTCTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTGTTCAAGCAGAACCGGGTCAGGATGATTTGTGATTGCCATGCAAAACCAGTTAAGGTGATTCAAAGTGAAGGGTTAAGGCAGCCTCTCTGCTTGGTCAATTCTACCCTTAGGGCTCCACATCAATGTCATGCACAGTACATGGAAAACATGGGTTCAATTGCTTCTCTGGTGATGGCTGTTATTGTCAATGGAAATGATACCACAAAGCTATGGGGTTTGCTTGTTTGTCACCACACTTCACCGCGTCATGTCCCTTTCCCGCTGCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTTCAGCTTTACATGGAGATGCAATTGGCATCACAGATAGCAGAGAAGAGAACTCTTAAAACCCAAAACTTGCTATGTGACATGCTTCTCCGTGATGCTCCTTTTAGTATTGCTACTCAATCTCCAAGCATAATGGATCTTGTGAAGTGTGACGGTGCTGCTCTGCTTTTTGGTGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAATCGCAGGTAAAGGACATTGCAGATTGGCTACTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACAGATAGTTTGGCTGATGCCGGTTACCCGGATGGTGCTTCACTGGGTGATGCAGTTTGTGGCATGGCAACTGCAAGAATCAATTCAAGAGATTTCTTGTTCTGGTTCAGGTCTCATGCAGCTAAGGAAATCAAATGGGGAGGAGCCAAGCACCACCCAGAGGATAAAGATGATGGAGGAAAGATGAACCCTAGACTTTCATTTAAAGCATTTCTTGAAGTAGTAAAATGCAAAAGTGTGCCATGGGAAGCGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCCAAGATGCAGAGAACTGTGGTCCTAAGACTCTAACTCATGTGAAGCAAGAGGACACTGATATGGGTGGGAATGGGATAGAAGAACTCAGTTCAGTGGCATTTGAAATGGTGAGATTGATCGAAACGGCAACAGTTCCAATTTTTGGGGTTGATTCGGATGGTATAATCAATGGGTGGAATACCAAAATTGCTGAACTGACAGGTCTGCAAACCAGTGAAGCTATGGGACAATCCCTTGTAAATGAAGTAGTCGTTGAGGACTCACGGGAAACTGTTGATAATATTCTGAAAAGAGCTCTGGAAGGTCAGGAGGACAAAAATGTTGAATTGAAGTTGAAACACTTTGGTCCGCATCAGCAAAAATCAGCTGTATATATAATGACCAATGCCTGTATAAGTAGGGATTACAAATATTCTGTTGTTGGGGTCTGCTTTGTGGGTCAAGACATCACTAATGAGAAATCTGTTCTGGATAAATTTATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCCCAACCCACTAATTCCACCCATATTTGCTTCAGATGAGAATGCCTGTTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGATGAAGTTATTGGGAAAATGCTTCCTGGGGAGATCTTTGGTGATTTATGTCGGTTAAAAGGTCAAGATACGCTTACTAGTTTCACGATTATTTTGTATCAAGGAATCAGTGGCCAAGATTCTGAGAAGTTCCCATTTAGATTTTTTAATAGAAAGGAGGAACTTGTGGAGGTGTTCTTGACAGTGAACAAAAGGATTGATGCAAGTGGTAAAATAGTTGGCTGTTTCTGTTTCTTGCAGATTGTACCACCAGACCTGCATCGGCCCTCAGAAGAACAAAGGCCAGAATGCAGGGGAAGGCTTTCTGAATTTAGGGAATTAGGTTATATACTACAAGAGATAAAGAATCCTTTAAATGGTATGCTTTTCACACAAAAACTCCTGCAAAATACAGCTGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGCAATGCTTGTGAGAGACAAATTATGGCAATTATTGAGGATGCGGATTTTGAAAGTATTGCTGAAGGAACTTTACAGCTAAAAATGGAGGAGTTTCTTCTGGGAAATATCCTAGATGCCGTTGTCAGTCAAGTGATGATCATGATAAGAGAAAGAAACCTGCAGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTTACTCTATTCGGTGATCAAATAAGGCTTCAAGTGGTCTTGTCTGACTTTTTGATGAATATGGTCTGCCACACACCATCTCCCAGTGGCTGGGTAGAAATAAAGATTTCACCTGGGCTGAAGATGATACAGGATGGAATCGAGTTTATTCATCTGCAGTTCAGAATCACCCATGCTGGTCAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGTGGTAATCAGTGGACTACACAGGAAGGTCTAGGGCTATACATGTCAAGAAAAATCCTCATTAAGATGAATGGCCATGTCCACTATGTAAGAGAACAAAACAAGTGCTACTTCCTCATTGATATTCAACTTAGAACAAGAAAAGAAAGGCAGAGGATTTTTCAAGCAGTAGAGACGAGCATGTTGCCTTAG 3408 0.4243 MMSKGSRELEKDATSSSSSFSDSPASNMKASARISDKDKAIAQYSADAGILAEYEQSGVSGKSFDYSRSVLDAPKSVSDEKMTAYLLRIQRGGLVQPFGCMLAIEEPTFRIIGYSENCFEMLGLNGKSHTKRFVSLIGVDATTLFTPSSGTSLAKAAASREISLLNPIWVCSRTTQKPFYAIMHRIDVGIVIDLEPARSSDHALSLAGAMQSQKLAVRAISRLQSLPGGDIGALCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLDPFLGLHYPATDIPQAARFLFKQNRVRMICDCHAKPVKVIQSEGLRQPLCLVNSTLRAPHQCHAQYMENMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLYMEMQLASQIAEKRTLKTQNLLCDMLLRDAPFSIATQSPSIMDLVKCDGAALLFGGNCWLLGTTPTESQVKDIADWLLSSHGDSTGLSTDSLADAGYPDGASLGDAVCGMATARINSRDFLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVVKCKSVPWEASEINAIHSLQLIMRDSFQDAENCGPKTLTHVKQEDTDMGGNGIEELSSVAFEMVRLIETATVPIFGVDSDGIINGWNTKIAELTGLQTSEAMGQSLVNEVVVEDSRETVDNILKRALEGQEDKNVELKLKHFGPHQQKSAVYIMTNACISRDYKYSVVGVCFVGQDITNEKSVLDKFIKLEGDYKAIIQSPNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGDLCRLKGQDTLTSFTIILYQGISGQDSEKFPFRFFNRKEELVEVFLTVNKRIDASGKIVGCFCFLQIVPPDLHRPSEEQRPECRGRLSEFRELGYILQEIKNPLNGMLFTQKLLQNTAVSENQKQFLDTSNACERQIMAIIEDADFESIAEGTLQLKMEEFLLGNILDAVVSQVMIMIRERNLQLFHEIPDEIKTLTLFGDQIRLQVVLSDFLMNMVCHTPSPSGWVEIKISPGLKMIQDGIEFIHLQFRITHAGQGLPSEILQEMFEGGNQWTTQEGLGLYMSRKILIKMNGHVHYVREQNKCYFLIDIQLRTRKERQRIFQAVETSMLP 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0577 1135 Pfam PAS fold 751 870 IPR013767 GO:0006355
Lele33g0577 1135 Pfam PAS fold 620 735 IPR013767 GO:0006355
Lele33g0577 1135 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Lele33g0577 1135 Pfam GAF domain 230 399 IPR003018 GO:0005515
Lele33g0577 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 731 IPR035965 -
Lele33g0577 1135 Gene3D PAS domain 619 747 - -
Lele33g0577 1135 FunFam Phytochrome 764 872 - -
Lele33g0577 1135 Gene3D PAS domain 764 873 - -
Lele33g0577 1135 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 390 IPR016132 -
Lele33g0577 1135 SMART HKATPase_4 1004 1118 IPR003594 -
Lele33g0577 1135 FunFam Phytochrome 955 1122 - -
Lele33g0577 1135 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1004 1112 IPR003594 -
Lele33g0577 1135 MobiDBLite consensus disorder prediction 12 30 - -
Lele33g0577 1135 CDD HATPase_Phy-like 1003 1116 IPR044767 -
Lele33g0577 1135 FunFam Phytochrome 613 745 - -
Lele33g0577 1135 TIGRFAM sensory_box: PAS domain S-box protein 624 739 IPR000014 -
Lele33g0577 1135 Gene3D PAS domain 89 333 - -
Lele33g0577 1135 ProSiteProfiles PAS repeat profile. 617 688 IPR000014 -
Lele33g0577 1135 CDD PAS 628 735 IPR000014 -
Lele33g0577 1135 MobiDBLite consensus disorder prediction 1 34 - -
Lele33g0577 1135 Pfam Phytochrome region 413 588 IPR013515 GO:0006355|GO:0009584
Lele33g0577 1135 Gene3D - 405 578 IPR043150 -
Lele33g0577 1135 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Lele33g0577 1135 ProSiteProfiles Histidine kinase domain profile. 899 1118 IPR005467 -
Lele33g0577 1135 Gene3D - 934 1110 IPR036890 -
Lele33g0577 1135 PANTHER OS08G0260000 PROTEIN 81 953 - -
Lele33g0577 1135 SMART pas_2 750 819 IPR000014 -
Lele33g0577 1135 SMART pas_2 619 686 IPR000014 -
Lele33g0577 1135 SUPERFAMILY GAF domain-like 408 586 - -
Lele33g0577 1135 SUPERFAMILY GAF domain-like 210 396 - -
Lele33g0577 1135 Pfam PAS fold 84 197 IPR013654 GO:0006355
Lele33g0577 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 199 IPR035965 -
Lele33g0577 1135 CDD HisKA 890 947 IPR003661 GO:0000155|GO:0007165
Lele33g0577 1135 Gene3D - 211 561 IPR029016 -
Lele33g0577 1135 ProSiteProfiles PAS repeat profile. 748 803 IPR000014 -
Lele33g0577 1135 PIRSF Phytochrome_conventional 14 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele33g0577 1135 SMART gaf_1 230 410 IPR003018 GO:0005515
Lele33g0577 1135 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 960 1107 IPR036890 -
Lele33g0577 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 867 IPR035965 -
Lele33g0577 1135 Pfam His Kinase A (phospho-acceptor) domain 897 955 IPR003661 GO:0000155|GO:0007165
Lele33g0577 1135 FunFam Phytochrome 405 535 - -
Lele33g0577 1135 CDD PAS 762 870 IPR000014 -
Lele33g0577 1135 SMART HisKA_10 893 956 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0577 Lele-ChrLele33 4110285 4115113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0577 21 1118 Histidine Kinase Gene Family AT4G18130 62.444 0.0 1449