Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0565 ATGTCTAGTCCTATTCATGGCCTAAAGATATCCAGAATAAGTCTTGAAGCGAGCTGGCATTCATCAGATTCATTCACAGCTGCAGAGAAATTAAGAAAGAAAGAAAGAAAGAAAAAGATGGGGCGAGGAAGATTGGCCATGACACTGATAGAGAAAGAGAAATCCAGAAAAGCGACGTTTCAGAAGAGAAAGAATGGAATCCTGAAGAAAGCTCATGAGCTTTCTACACTATGTGGAGTTGACTGTTGCTTGATAGTCTATAGCCCTAACTCCATTAACGACCTTCCTGAGATTTGGCCTCCAAATCACACACAGGTGAATGAAATCATTGAGAAGTATAGGGCGAAGACCACTGAGAAAGGTCCCAAGAAGTACAATGTAATGGATTTCTTCAAGGACAGGAAGAACAAGGTGGAAGCTGAAGCATGCAAGCTTCAGAAGGAGAGGCTCCGAAAACTCTATCCGACGTGGGACTTCTCTTTTGACAAACTTGGCGAAGAACAGCTGAGGATGTTCGTCGCCCTGTTGGATTTGAAGATCGAAGATTGCAACGAGAGGATCAACAAGTTGAAGAAGAAGCGCTATATAGAAGCAAAACAACAACAAGAAGGAACAGATCAATCTCTAGACAAATCATCAGCTTCAGTTTCAAACAGAAGCCATCTCAGTTTCATGCACAAGAACAACAGCAACAACACTACGTTGTCAGCTCATCATCATCAAACCCAAGATTTTCCTCTCAAGTCTGAAGATCATCATCATCAACAACATGTGATCCTTCATCCCTTACATCCAAATCTGATGCCTTTGATGATGATCACACAGAATGATTCTGCAGCAACACAGATCAGTGATGCGTTTAGTCATCATTATGATCTGATGAGAGAATCTTCTTCTTCATGCTGTTACAATAATAATGACAACAATTACTATCCTTATCTGCAGAATAGTAATATTATGCAGTATCATCATCATGAAGCAAATTTGCAGGTCCTTAATCCAGCTTCTGTGATGATGCAAGAACTGCAGACCCACTACGGGTACCATCGTCATGATCTGCTCCAAGTTCACCAGACGTTCAACCATATGGACCAAAAGAAGTAA 1104 0.4112 MSSPIHGLKISRISLEASWHSSDSFTAAEKLRKKERKKKMGRGRLAMTLIEKEKSRKATFQKRKNGILKKAHELSTLCGVDCCLIVYSPNSINDLPEIWPPNHTQVNEIIEKYRAKTTEKGPKKYNVMDFFKDRKNKVEAEACKLQKERLRKLYPTWDFSFDKLGEEQLRMFVALLDLKIEDCNERINKLKKKRYIEAKQQQEGTDQSLDKSSASVSNRSHLSFMHKNNSNNTTLSAHHHQTQDFPLKSEDHHHQQHVILHPLHPNLMPLMMITQNDSAATQISDAFSHHYDLMRESSSSCCYNNNDNNYYPYLQNSNIMQYHHHEANLQVLNPASVMMQELQTHYGYHRHDLLQVHQTFNHMDQKK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0565 367 PRINTS MADS domain signature 62 77 IPR002100 GO:0003677|GO:0046983
Lele33g0565 367 PRINTS MADS domain signature 42 62 IPR002100 GO:0003677|GO:0046983
Lele33g0565 367 Coils Coil 173 193 - -
Lele33g0565 367 CDD MADS 41 101 - -
Lele33g0565 367 SMART madsneu2 40 101 IPR002100 GO:0003677|GO:0046983
Lele33g0565 367 SUPERFAMILY SRF-like 40 118 IPR036879 GO:0003677|GO:0046983
Lele33g0565 367 Gene3D - 52 138 IPR036879 GO:0003677|GO:0046983
Lele33g0565 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 90 IPR002100 GO:0003677|GO:0046983
Lele33g0565 367 ProSiteProfiles MADS-box domain profile. 40 91 IPR002100 GO:0003677|GO:0046983
Lele33g0565 367 PANTHER MADS BOX PROTEIN 42 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0565 Lele-ChrLele33 3878272 3881499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0565 40 186 Type I MADS-box Gene Family AT5G55690 37.748 1.45e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele33g0565 SRF-TF 7.8e-20 No_clan